MRIQC#
Author: Monika Doerig
Citation:
MRIQC:
Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661
The documentation of this project is found here.
Data from OpenNeuro: Flanker Dataset
Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null
Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.
Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434
Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046
Output CPU information#
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : GenuineIntel
model name : Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz
Load MRIQC#
import module
await module.purge()
await module.load('mriqc/22.0.6')
await module.list()
['mriqc/22.0.6']
!mriqc -h
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
[--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
[--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
[--bids-database-dir PATH] [--nprocs NPROCS]
[--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
[--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
[--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
[--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
[--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
[--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
[--fd_thres FD_THRES] [--deoblique] [--despike]
[--start-idx START_IDX] [--stop-idx STOP_IDX]
bids_dir output_dir {participant,group} [{participant,group} ...]
MRIQC 22.0.6 Automated Quality Control and visual reports for Quality
Assesment of structural (T1w, T2w) and functional MRI of the brain. IMPORTANT:
Anonymized quality metrics (IQMs) will be submitted to MRIQC's metrics
repository. Submission of IQMs can be disabled using the ``--no-sub``
argument. Please visit https://mriqc.readthedocs.io/en/latest/dsa.html to
revise MRIQC's Data Sharing Agreement.
positional arguments:
bids_dir The root folder of a BIDS valid dataset (sub-XXXXX
folders should be found at the top level in this
folder).
output_dir The directory where the output files should be stored.
If you are running group level analysis this folder
should be prepopulated with the results of the
participant level analysis.
{participant,group} Level of the analysis that will be performed. Multiple
participant level analyses can be run independently
(in parallel) using the same output_dir.
optional arguments:
-h, --help show this help message and exit
--version show program's version number and exit
-v, --verbose Increases log verbosity for each occurrence, debug
level is -vvv. (default: 0)
--species {human,rat}
Use appropriate template for population (default:
human)
Options for filtering BIDS queries:
--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant_label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant-labels PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant_labels PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]
A space delimited list of participant identifiers or a
single identifier (the sub- prefix can be removed).
(default: None)
--session-id [SESSION_ID ...]
Filter input dataset by session ID. (default: None)
--run-id [RUN_ID ...]
Filter input dataset by run ID (only integer run IDs
are valid). (default: None)
--task-id [TASK_ID ...]
Filter input dataset by task ID. (default: None)
-m [MODALITIES ...], --modalities [MODALITIES ...]
Filter input dataset by MRI type. (default: None)
--dsname DSNAME A dataset name. (default: None)
--bids-database-dir PATH
Path to an existing PyBIDS database folder, for faster
indexing (especially useful for large datasets).
(default: None)
Options to handle performance:
--nprocs NPROCS, --n_procs NPROCS, --n_cpus NPROCS, -n-cpus NPROCS
Maximum number of simultaneously running parallel
processes executed by *MRIQC* (e.g., several instances
of ANTs' registration). However, when ``--nprocs`` is
greater or equal to the ``--omp-nthreads`` option, it
also sets the maximum number of threads that
simultaneously running processes may aggregate
(meaning, with ``--nprocs 16 --omp-nthreads 8`` a
maximum of two 8-CPU-threaded processes will be
running at a given time). Under this mode of
operation, ``--nprocs`` sets the maximum number of
processors that can be assigned work within an *MRIQC*
job, which includes all the processors used by
currently running single- and multi-threaded
processes. If ``None``, the number of CPUs available
will be automatically assigned (which may not be what
you want in, e.g., shared systems like a HPC cluster.
(default: None)
--omp-nthreads OMP_NTHREADS, --ants-nthreads OMP_NTHREADS
Maximum number of threads that multi-threaded
processes executed by *MRIQC* (e.g., ANTs'
registration) can use. If ``None``, the number of CPUs
available will be automatically assigned (which may
not be what you want in, e.g., shared systems like a
HPC cluster. (default: None)
--mem MEMORY_GB, --mem_gb MEMORY_GB, --mem-gb MEMORY_GB
Upper bound memory limit for MRIQC processes.
(default: None)
--testing Use testing settings for a minimal footprint.
(default: False)
-f, --float32 Cast the input data to float32 if it's represented in
higher precision (saves space and improves
perfomance). (default: True)
--pdb Open Python debugger (pdb) on exceptions. (default:
False)
Instrumental options:
-w WORK_DIR, --work-dir WORK_DIR
Path where intermediate results should be stored.
(default: /home/jovyan/Git_repositories/example-
notebooks/books/workflows/work)
--verbose-reports
--write-graph Write workflow graph. (default: False)
--dry-run Do not run the workflow. (default: False)
--resource-monitor, --profile
Hook up the resource profiler callback to nipype.
(default: False)
--use-plugin USE_PLUGIN
Nipype plugin configuration file. (default: None)
--no-sub Turn off submission of anonymized quality metrics to
MRIQC's metrics repository. (default: False)
--email EMAIL Email address to include with quality metric
submission. (default: )
--webapi-url WEBAPI_URL
IP address where the MRIQC WebAPI is listening.
(default: None)
--webapi-port WEBAPI_PORT
Port where the MRIQC WebAPI is listening. (default:
None)
--upload-strict Upload will fail if upload is strict. (default: False)
Specific settings for ANTs:
--ants-float Use float number precision on ANTs computations.
(default: False)
--ants-settings ANTS_SETTINGS
Path to JSON file with settings for ANTs. (default:
None)
Functional MRI workflow configuration:
--ica Run ICA on the raw data and include the components in
the individual reports (slow but potentially very
insightful). (default: False)
--fft-spikes-detector
Turn on FFT based spike detector (slow). (default:
False)
--fd_thres FD_THRES Threshold on framewise displacement estimates to
detect outliers. (default: 0.2)
--deoblique Deoblique the functional scans during head motion
correction preprocessing. (default: False)
--despike Despike the functional scans during head motion
correction preprocessing. (default: False)
--start-idx START_IDX
DEPRECATED Initial volume in functional timeseries
that should be considered for preprocessing. (default:
None)
--stop-idx STOP_IDX DEPRECATED Final volume in functional timeseries that
should be considered for preprocessing. (default:
None)
Data preparation#
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03
Cloning: 0%| | 0.00/2.00 [00:00<?, ? candidates/s]
Enumerating: 0.00 Objects [00:00, ? Objects/s]
Counting: 0%| | 0.00/27.0 [00:00<?, ? Objects/s]
Compressing: 0%| | 0.00/23.0 [00:00<?, ? Objects/s]
Receiving: 0%| | 0.00/2.15k [00:00<?, ? Objects/s]
Resolving: 0%| | 0.00/537 [00:00<?, ? Deltas/s]
[INFO ] scanning for unlocked files (this may take some time)
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| datalad siblings -d "/home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102" enable -s s3-PRIVATE
install(ok): /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102 (dataset)
Total: 0%| | 0.00/204M [00:00<?, ? Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 0%| | 0.00/10.7M [00:00<?, ? Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 1%| | 155k/10.7M [00:00<00:19, 545k Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 7%|▎ | 782k/10.7M [00:00<00:05, 1.84M Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 14%|▍ | 1.55M/10.7M [00:00<00:02, 3.37M Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 28%|▊ | 2.99M/10.7M [00:00<00:01, 6.38M Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 47%|█▍ | 5.02M/10.7M [00:00<00:00, 9.57M Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 75%|██▎| 8.10M/10.7M [00:00<00:00, 12.8M Bytes/s]
Get sub-02/a .. 2_T1w.nii.gz: 93%|██▊| 9.94M/10.7M [00:01<00:00, 14.1M Bytes/s]
Total: 5%|█▍ | 10.7M/204M [00:01<00:35, 5.51M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 0%| | 0.00/29.2M [00:00<?, ? Bytes/s]
Get sub-02/f .. _bold.nii.gz: 5%|▏ | 1.46M/29.2M [00:00<00:01, 14.6M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 12%|▎ | 3.38M/29.2M [00:00<00:02, 10.9M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 19%|▌ | 5.40M/29.2M [00:00<00:01, 14.1M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 26%|▊ | 7.52M/29.2M [00:00<00:01, 16.4M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 33%|▉ | 9.65M/29.2M [00:00<00:01, 17.9M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 41%|█▏ | 11.9M/29.2M [00:00<00:00, 19.5M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 48%|█▍ | 14.0M/29.2M [00:00<00:00, 19.7M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 56%|█▋ | 16.4M/29.2M [00:00<00:00, 21.0M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 64%|█▉ | 18.6M/29.2M [00:01<00:00, 21.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 78%|██▎| 22.9M/29.2M [00:01<00:00, 21.3M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 86%|██▌| 25.1M/29.2M [00:01<00:00, 21.6M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 98%|██▉| 28.7M/29.2M [00:01<00:00, 20.0M Bytes/s]
Total: 20%|█████▎ | 39.9M/204M [00:03<00:15, 10.6M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 0%| | 0.00/29.2M [00:00<?, ? Bytes/s]
Get sub-02/f .. _bold.nii.gz: 3%| | 812k/29.2M [00:00<00:03, 7.99M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 12%|▎ | 3.51M/29.2M [00:00<00:02, 12.0M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 17%|▌ | 4.91M/29.2M [00:00<00:01, 12.7M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 22%|▋ | 6.51M/29.2M [00:00<00:01, 13.8M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 29%|▊ | 8.35M/29.2M [00:00<00:01, 15.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 39%|█▏ | 11.4M/29.2M [00:00<00:01, 15.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 44%|█▎ | 13.0M/29.2M [00:00<00:01, 15.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 56%|█▋ | 16.3M/29.2M [00:01<00:00, 15.8M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 67%|██ | 19.7M/29.2M [00:01<00:00, 16.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 81%|██▍| 23.5M/29.2M [00:01<00:00, 17.2M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 87%|██▌| 25.5M/29.2M [00:01<00:00, 17.7M Bytes/s]
Get sub-02/f .. _bold.nii.gz: 0%| | 0.00/29.2M [00:00<?, ? Bytes/s]
Total: 34%|█████████▏ | 69.1M/204M [00:05<00:11, 11.8M Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 0%| | 0.00/10.6M [00:00<?, ? Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 13%|▍ | 1.34M/10.6M [00:00<00:00, 10.9M Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 29%|▊ | 3.08M/10.6M [00:00<00:00, 10.2M Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 50%|█▌ | 5.34M/10.6M [00:00<00:00, 13.4M Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 70%|██ | 7.39M/10.6M [00:00<00:00, 15.6M Bytes/s]
Get sub-01/a .. 1_T1w.nii.gz: 97%|██▉| 10.3M/10.6M [00:00<00:00, 15.0M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 0%| | 0.00/28.1M [00:00<?, ? Bytes/s]
Get sub-01/f .. _bold.nii.gz: 5%|▏ | 1.40M/28.1M [00:00<00:03, 7.21M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 11%|▎ | 2.95M/28.1M [00:00<00:02, 10.7M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 16%|▍ | 4.61M/28.1M [00:00<00:01, 12.9M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 25%|▊ | 7.02M/28.1M [00:00<00:01, 12.4M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 32%|▉ | 8.89M/28.1M [00:00<00:01, 11.6M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 36%|█ | 10.2M/28.1M [00:00<00:01, 11.3M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 41%|█▏ | 11.4M/28.1M [00:00<00:01, 11.5M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 49%|█▍ | 13.6M/28.1M [00:01<00:01, 11.4M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 56%|█▋ | 15.7M/28.1M [00:01<00:01, 10.9M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 61%|█▊ | 17.2M/28.1M [00:01<00:00, 11.6M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 69%|██ | 19.3M/28.1M [00:01<00:00, 11.1M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 74%|██▏| 20.7M/28.1M [00:01<00:00, 11.8M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 82%|██▍| 22.9M/28.1M [00:02<00:00, 11.4M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 87%|██▌| 24.3M/28.1M [00:02<00:00, 11.5M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 92%|██▊| 25.9M/28.1M [00:02<00:00, 11.4M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 99%|██▉| 27.9M/28.1M [00:02<00:00, 11.6M Bytes/s]
Total: 53%|██████████████▊ | 108M/204M [00:09<00:08, 11.2M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 0%| | 0.00/28.1M [00:00<?, ? Bytes/s]
Get sub-01/f .. _bold.nii.gz: 8%|▎ | 2.39M/28.1M [00:00<00:02, 11.9M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 13%|▍ | 3.75M/28.1M [00:00<00:02, 12.1M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 22%|▋ | 6.05M/28.1M [00:00<00:01, 12.1M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 26%|▊ | 7.31M/28.1M [00:00<00:01, 12.2M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 35%|█ | 9.80M/28.1M [00:00<00:01, 12.3M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 44%|█▎ | 12.3M/28.1M [00:01<00:01, 12.3M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 52%|█▌ | 14.5M/28.1M [00:01<00:01, 11.9M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 56%|█▋ | 15.8M/28.1M [00:01<00:01, 11.8M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 65%|█▉ | 18.3M/28.1M [00:01<00:00, 12.4M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 73%|██▏| 20.7M/28.1M [00:01<00:00, 12.1M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 78%|██▎| 21.9M/28.1M [00:01<00:00, 11.8M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 86%|██▌| 24.3M/28.1M [00:02<00:00, 12.0M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 95%|██▊| 26.7M/28.1M [00:02<00:00, 12.0M Bytes/s]
Get sub-01/f .. _bold.nii.gz: 0%| | 0.00/28.1M [00:00<?, ? Bytes/s]
Get sub-03/a .. 3_T1w.nii.gz: 0%| | 0.00/10.7M [00:00<?, ? Bytes/s]
Get sub-03/a .. 3_T1w.nii.gz: 23%|▋ | 2.49M/10.7M [00:00<00:00, 12.4M Bytes/s]
Get sub-03/a .. 3_T1w.nii.gz: 46%|█▍ | 4.91M/10.7M [00:00<00:00, 12.2M Bytes/s]
Get sub-03/a .. 3_T1w.nii.gz: 64%|█▉ | 6.89M/10.7M [00:00<00:00, 11.1M Bytes/s]
Get sub-03/a .. 3_T1w.nii.gz: 78%|██▎| 8.32M/10.7M [00:00<00:00, 11.5M Bytes/s]
Total: 72%|████████████████████ | 147M/204M [00:13<00:05, 10.8M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 0%| | 0.00/28.8M [00:00<?, ? Bytes/s]
Get sub-03/f .. _bold.nii.gz: 9%|▎ | 2.48M/28.8M [00:00<00:02, 12.4M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 17%|▌ | 4.96M/28.8M [00:00<00:01, 12.4M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 26%|▊ | 7.37M/28.8M [00:00<00:01, 12.0M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 31%|▉ | 8.94M/28.8M [00:00<00:01, 12.9M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 40%|█▏ | 11.4M/28.8M [00:00<00:01, 12.6M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 49%|█▍ | 14.0M/28.8M [00:01<00:01, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 53%|█▌ | 15.3M/28.8M [00:01<00:01, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 62%|█▊ | 17.8M/28.8M [00:01<00:00, 12.6M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 70%|██ | 20.2M/28.8M [00:01<00:00, 12.3M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 77%|██▎| 22.1M/28.8M [00:01<00:00, 12.0M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 84%|██▌| 24.2M/28.8M [00:01<00:00, 13.0M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 91%|██▋| 26.2M/28.8M [00:02<00:00, 11.8M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 96%|██▉| 27.7M/28.8M [00:02<00:00, 12.4M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 0%| | 0.00/28.8M [00:00<?, ? Bytes/s]
Get sub-03/f .. _bold.nii.gz: 8%|▎ | 2.41M/28.8M [00:00<00:02, 12.0M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 13%|▍ | 3.68M/28.8M [00:00<00:02, 12.3M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 17%|▌ | 5.03M/28.8M [00:00<00:01, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 24%|▋ | 7.00M/28.8M [00:00<00:01, 11.2M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 30%|▉ | 8.77M/28.8M [00:00<00:01, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 38%|█▏ | 11.0M/28.8M [00:00<00:01, 12.1M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 43%|█▎ | 12.5M/28.8M [00:01<00:01, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 52%|█▌ | 15.0M/28.8M [00:01<00:01, 12.6M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 60%|█▊ | 17.4M/28.8M [00:01<00:00, 12.1M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 69%|██ | 19.8M/28.8M [00:01<00:00, 12.1M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 74%|██▏| 21.4M/28.8M [00:01<00:00, 12.8M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 83%|██▌| 24.0M/28.8M [00:01<00:00, 12.9M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 92%|██▊| 26.6M/28.8M [00:02<00:00, 12.7M Bytes/s]
Get sub-03/f .. _bold.nii.gz: 0%| | 0.00/28.8M [00:00<?, ? Bytes/s]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02 (directory)
get(ok): sub-01 (directory)
get(ok): sub-03 (directory)
action summary:
get (ok: 12)
The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.
Positional Arguments#
bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.analysis_level: Possible choices: participant, group
Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.
-v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.
Options to handle performance#
--nprocs, --n_procs, --n_cpus, -n-cpusMaximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.--mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.
Instrumental options#
-w, --work-dir: Path where intermediate results should be stored.--verbose-reports: Generate verbose HTML reports with additional details--no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.
!
Warning:
--no-sub and --notrack may be necessary in environments with limited internet access, where automatic submission of quality metrics to MRIQC's web server and tracking data to NiPreps developers may fail or trigger runtime errors.
Participant-level Analysis#
%%bash
# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir
# Run MRIQC
mriqc ds000102 \
MRIQC \
participant \
--participant-label sub-01 sub-02 sub-03 \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
250630-01:04:13,981 cli IMPORTANT:
Running MRIQC version 22.0.6:
* BIDS dataset path: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102.
* Output folder: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC.
* Analysis levels: ['participant'].
250630-01:04:52,250 nipype.workflow INFO:
Building functional MRIQC workflow for files: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
250630-01:05:11,442 nipype.workflow INFO:
Building anatomical MRIQC workflow for 3 NIfTI files..
250630-01:05:36,827 nipype.workflow INFO:
Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
250630-01:05:37,842 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datalad_get".
250630-01:05:37,849 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250630-01:05:37,878 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
250630-01:05:37,878 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
250630-01:05:37,881 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datalad_get".
250630-01:05:37,884 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250630-01:05:37,894 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:37,899 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250630-01:05:38,389 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.385684s.
250630-01:05:38,707 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
250630-01:05:38,711 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:41,203 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 2.490639s.
250630-01:05:41,469 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
250630-01:05:41,480 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250630-01:05:41,483 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:41,483 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:41,785 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.298887s.
250630-01:05:41,933 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.446892s.
250630-01:05:42,79 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
250630-01:05:42,83 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:43,519 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.434384s.
250630-01:05:43,703 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
250630-01:05:43,705 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250630-01:05:43,707 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:43,707 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:43,948 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.23963s.
250630-01:05:44,161 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
250630-01:05:44,163 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:44,208 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.499777s.
250630-01:05:45,647 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.482925s.
250630-01:05:46,0 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
250630-01:05:46,2 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250630-01:05:46,3 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:46,4 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:46,258 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.253748s.
250630-01:05:46,434 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
250630-01:05:46,436 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:46,470 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.465029s.
250630-01:05:47,931 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.49404s.
250630-01:05:48,104 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
250630-01:05:48,106 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250630-01:05:48,107 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:48,116 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:48,317 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.20911s.
250630-01:05:48,481 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
250630-01:05:48,483 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:48,562 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.444384s.
250630-01:05:49,818 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.3335029999999999s.
250630-01:05:50,125 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
250630-01:05:50,126 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250630-01:05:50,127 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:05:50,128 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:50,307 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.179075s.
250630-01:05:50,456 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
250630-01:05:50,458 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:05:50,599 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.469437s.
250630-01:05:51,868 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.409433s.
250630-01:05:52,36 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250630-01:05:52,38 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250630-01:05:52,62 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/sanitize".
250630-01:05:52,71 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:52,731 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.69215s.
250630-01:05:52,738 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
250630-01:05:52,746 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:52,829 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.082324s.
250630-01:05:54,411 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.335709s.
250630-01:05:54,721 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/sanitize".
250630-01:05:54,727 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:54,727 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
250630-01:05:54,737 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:54,846 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.108454s.
250630-01:05:56,305 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/sanitize".
250630-01:05:56,307 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
250630-01:05:56,308 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:56,309 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250630-01:05:57,71 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.342989s.
250630-01:05:58,244 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
250630-01:05:58,261 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:05:58,495 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.17915s.
250630-01:05:58,571 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.261022s.
250630-01:06:00,330 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
250630-01:06:00,331 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
250630-01:06:00,341 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:06:00,343 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:06:17,500 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 39.461033s.
250630-01:06:17,501 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 39.574958s.
250630-01:06:17,501 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 39.479618s.
250630-01:06:18,299 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/conform".
250630-01:06:18,299 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/conform".
250630-01:06:18,299 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
250630-01:06:18,302 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:06:18,302 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250630-01:06:18,303 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250630-01:06:20,254 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.950491s.
250630-01:06:20,274 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.970418s.
250630-01:06:20,281 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.977962s.
250630-01:06:22,355 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
250630-01:06:22,355 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
250630-01:06:22,355 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
250630-01:06:22,358 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250630-01:06:22,358 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:06:22,358 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250630-01:06:23,113 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.754201s.
250630-01:06:23,614 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.254802s.
250630-01:06:24,19 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.659089s.
250630-01:06:24,307 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
250630-01:06:24,309 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
250630-01:06:24,309 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
250630-01:06:24,310 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250630-01:06:24,312 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:06:24,312 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250630-01:06:28,220 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 3.906745s.
250630-01:06:30,325 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_clip".
250630-01:06:30,329 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250630-01:06:48,20 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 23.707071s.
250630-01:06:48,336 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMask".
250630-01:06:48,339 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250630-01:06:49,975 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.635219s.
250630-01:06:50,398 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNoise".
250630-01:06:50,402 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:06:57,28 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 32.716723s.
250630-01:06:57,873 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 57.530693s.
250630-01:06:58,401 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
250630-01:06:58,402 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
250630-01:06:58,404 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250630-01:06:58,414 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250630-01:06:59,827 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 29.495952s.
250630-01:07:00,401 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
250630-01:07:00,407 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:07:00,462 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.045866s.
250630-01:07:02,372 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
250630-01:07:02,376 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:07:05,91 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.712271s.
250630-01:07:06,448 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
250630-01:07:06,452 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:07:09,366 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 18.962251s.
250630-01:07:10,410 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
250630-01:07:10,413 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:07:19,315 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 18.905783s.
250630-01:07:20,112 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 9.698129s.
250630-01:07:20,483 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
250630-01:07:20,484 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
250630-01:07:20,494 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:07:20,496 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:07:21,746 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 23.340646s.
250630-01:07:22,691 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
250630-01:07:22,709 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:07:28,834 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 8.336994s.
250630-01:07:30,538 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
250630-01:07:30,541 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:07:39,246 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 8.703784s.
250630-01:07:40,537 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
250630-01:07:40,542 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250630-01:08:17,321 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 136.976882s.
250630-01:08:18,612 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
250630-01:08:18,618 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250630-01:08:22,756 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 4.135922s.
250630-01:08:24,533 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
250630-01:08:24,536 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:08:26,676 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 148.413224s.
250630-01:08:28,579 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
250630-01:08:28,592 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:09:22,750 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 57.761328s.
250630-01:09:23,312 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 54.34384s.
250630-01:09:24,681 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
250630-01:09:24,689 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
250630-01:09:24,743 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:09:24,771 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:09:24,771 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.021268s.
250630-01:09:25,792 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 139.338333s.
250630-01:09:26,558 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/mean".
250630-01:09:26,561 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250630-01:09:26,562 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:09:26,599 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:09:28,843 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.242723s.
250630-01:09:29,728 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 3.164414s.
250630-01:09:30,583 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
250630-01:09:30,584 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:30,601 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:09:30,602 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:31,699 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.095729s.
250630-01:09:32,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
250630-01:09:32,619 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:09:32,631 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.009166s.
250630-01:09:34,440 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.836436s.
250630-01:09:34,574 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/mean".
250630-01:09:34,578 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:09:36,81 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.501477s.
250630-01:09:36,607 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
250630-01:09:36,607 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250630-01:09:36,610 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:09:36,612 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:09:37,975 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.3617270000000001s.
250630-01:09:38,552 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:38,556 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:39,41 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.428656s.
250630-01:09:39,914 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.35589s.
250630-01:09:40,515 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
250630-01:09:40,516 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/mean".
250630-01:09:40,541 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:09:40,554 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:09:40,558 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.015369s.
250630-01:09:42,117 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.5612599999999999s.
250630-01:09:42,580 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250630-01:09:42,581 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
250630-01:09:42,584 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:09:42,587 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:09:43,581 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.993093s.
250630-01:09:44,551 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:44,558 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:44,591 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.004448s.
250630-01:09:45,658 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.099575s.
250630-01:09:46,559 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:46,560 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:46,563 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:46,569 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:47,567 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.002141s.
250630-01:09:48,75 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 145.364322s.
250630-01:09:48,174 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.6035080000000002s.
250630-01:09:48,618 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
250630-01:09:48,619 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/mean".
250630-01:09:48,619 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250630-01:09:48,630 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:09:48,632 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:09:48,640 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.00618s.
250630-01:09:48,641 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:09:49,860 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.228793s.
250630-01:09:50,57 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.41456s.
250630-01:09:50,544 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
250630-01:09:50,545 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250630-01:09:50,547 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
250630-01:09:50,549 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:09:50,550 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250630-01:09:50,550 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250630-01:09:50,665 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 150.15809s.
250630-01:09:51,767 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.215395s.
250630-01:09:52,653 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/mean".
250630-01:09:52,660 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
250630-01:09:52,661 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:09:52,663 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:09:52,668 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.00394s.
250630-01:09:52,964 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.41265s.
250630-01:09:53,956 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.293552s.
250630-01:09:54,522 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250630-01:09:54,523 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
250630-01:09:54,524 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
250630-01:09:54,527 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:09:54,533 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:09:54,535 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250630-01:09:56,38 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.509358s.
250630-01:09:56,572 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
250630-01:09:56,587 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:09:57,388 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.853107s.
250630-01:09:58,512 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.922685s.
250630-01:09:58,537 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250630-01:09:58,542 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:00,537 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250630-01:10:00,540 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:00,979 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.428338s.
250630-01:10:02,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250630-01:10:02,609 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:05,690 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.149583s.
250630-01:10:06,621 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250630-01:10:06,627 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:08,692 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.081559s.
250630-01:10:10,377 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 45.597851s.
250630-01:10:10,586 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
250630-01:10:10,589 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:10:11,45 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.455308s.
250630-01:10:13,580 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250630-01:10:13,580 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
250630-01:10:13,586 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250630-01:10:13,586 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:14,930 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 8.29859s.
250630-01:10:16,381 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.790835s.
250630-01:10:16,590 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250630-01:10:16,594 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:18,559 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250630-01:10:18,562 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:18,649 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 158.105598s.
250630-01:10:20,579 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
250630-01:10:20,593 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250630-01:10:20,602 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.007088s.
250630-01:10:22,733 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/mean".
250630-01:10:22,737 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250630-01:10:23,307 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.711639s.
250630-01:10:24,630 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250630-01:10:24,635 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250630-01:10:25,10 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.269955s.
250630-01:10:25,630 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 7.066938s.
250630-01:10:26,7 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.370219s.
250630-01:10:26,543 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
250630-01:10:26,544 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250630-01:10:26,545 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
250630-01:10:26,547 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250630-01:10:26,548 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:26,548 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:10:27,872 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.322529s.
250630-01:10:28,577 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250630-01:10:28,580 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:29,381 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.832878s.
250630-01:10:30,590 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250630-01:10:30,593 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:32,767 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.810326s.
250630-01:10:33,319 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 6.769461s.
250630-01:10:34,599 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250630-01:10:34,602 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:34,608 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250630-01:10:34,611 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:35,930 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.335177s.
250630-01:10:36,581 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
250630-01:10:36,585 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:10:38,75 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.488335s.
250630-01:10:38,560 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250630-01:10:38,570 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:39,941 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.328772s.
250630-01:10:40,705 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250630-01:10:40,709 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:40,740 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.136788s.
250630-01:10:42,584 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250630-01:10:42,587 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:42,768 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.976519s.
250630-01:10:44,648 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250630-01:10:44,653 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:47,287 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.57701s.
250630-01:10:48,702 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
250630-01:10:48,706 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:10:48,818 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.229855s.
250630-01:10:49,898 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.190547s.
250630-01:10:50,248 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.593446s.
250630-01:10:50,583 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250630-01:10:50,584 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250630-01:10:50,587 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:50,587 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:50,588 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250630-01:10:50,594 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:54,41 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 3.45204s.
250630-01:10:54,695 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250630-01:10:54,699 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:10:55,950 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 5.354473s.
250630-01:10:56,492 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.903534s.
250630-01:10:56,621 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
250630-01:10:56,625 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250630-01:10:58,134 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.508436s.
250630-01:10:58,705 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250630-01:10:58,711 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250630-01:10:58,712 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:10:58,716 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250630-01:11:00,572 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.870872s.
250630-01:11:01,720 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 3.005947s.
250630-01:11:02,732 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250630-01:11:02,733 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250630-01:11:02,736 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250630-01:11:02,736 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250630-01:11:05,15 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.296332s.
250630-01:11:06,691 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250630-01:11:06,697 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:11:07,922 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.185235s.
250630-01:11:08,608 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
250630-01:11:08,612 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:11:08,615 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 5.877305s.
250630-01:11:10,732 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
250630-01:11:10,746 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:11:14,322 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.574221s.
250630-01:11:14,642 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
250630-01:11:14,657 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:11:15,877 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.262482s.
250630-01:11:16,646 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
250630-01:11:16,649 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:11:17,66 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.415913s.
250630-01:11:17,988 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 11.290102s.
250630-01:11:18,748 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250630-01:11:18,754 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250630-01:11:18,779 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:11:18,803 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:11:22,48 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 7.389442s.
250630-01:11:22,680 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250630-01:11:22,687 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:11:22,977 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.171771s.
250630-01:11:24,690 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250630-01:11:24,701 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:11:35,557 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 10.854473s.
250630-01:11:37,298 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
250630-01:11:37,332 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:11:41,86 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 22.304769s.
250630-01:11:43,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
250630-01:11:43,51 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:11:43,519 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 6.177997s.
250630-01:11:44,985 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
250630-01:11:45,5 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:11:48,687 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 5.628016s.
250630-01:11:50,818 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
250630-01:11:50,822 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:11:50,883 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.060343s.
250630-01:11:52,712 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250630-01:11:52,717 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:11:53,26 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 8.008918s.
250630-01:11:54,742 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250630-01:11:54,753 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:11:59,355 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.595712s.
250630-01:12:01,170 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250630-01:12:01,214 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:12:02,792 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.067746s.
250630-01:12:04,955 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250630-01:12:04,960 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:12:19,431 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 14.469968s.
250630-01:12:21,70 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
250630-01:12:21,113 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:12:28,766 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.627392s.
250630-01:12:31,175 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
250630-01:12:31,268 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:12:35,80 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.804399s.
250630-01:12:36,946 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
250630-01:12:36,960 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:12:40,757 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.7954470000000002s.
250630-01:12:42,849 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
250630-01:12:42,853 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:12:42,901 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.047158s.
250630-01:12:44,786 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250630-01:12:44,790 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:12:52,180 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.388858s.
250630-01:12:52,861 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250630-01:12:52,866 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:13:02,6 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 9.137973s.
250630-01:13:03,235 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250630-01:13:03,268 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:14:27,702 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 273.15319s.
250630-01:14:27,807 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 254.216865s.
250630-01:14:28,2 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 277.450823s.
250630-01:14:28,997 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
250630-01:14:28,997 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
250630-01:14:28,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
250630-01:14:29,55 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:14:29,56 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:14:29,65 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:14:36,983 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 194.292669s.
250630-01:14:39,20 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
250630-01:14:39,50 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:14:39,699 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 10.619479s.
250630-01:14:40,897 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 159.681144s.
250630-01:14:40,942 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
250630-01:14:40,960 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:14:43,29 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
250630-01:14:43,43 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:14:45,459 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 16.395764s.
250630-01:14:46,973 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
250630-01:14:46,985 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:14:50,954 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 11.898662999999999s.
250630-01:14:50,961 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 21.435265s.
250630-01:14:52,725 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 9.680165s.
250630-01:14:52,987 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
250630-01:14:52,990 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
250630-01:14:52,990 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
250630-01:14:52,993 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:14:52,994 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250630-01:14:52,997 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:15:00,594 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 117.318175s.
250630-01:15:01,71 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
250630-01:15:01,76 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:15:02,422 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 21.459697s.
250630-01:15:03,70 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
250630-01:15:03,81 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:15:03,631 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 10.631673s.
250630-01:15:04,620 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 17.633527s.
250630-01:15:04,938 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250630-01:15:04,939 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
250630-01:15:04,943 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:15:04,945 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:15:06,556 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 13.562043s.
250630-01:15:06,936 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
250630-01:15:06,942 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:15:07,25 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.080066s.
250630-01:15:08,589 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 5.506454s.
250630-01:15:09,48 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
250630-01:15:09,49 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
250630-01:15:09,51 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:15:09,53 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:15:09,155 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.204236s.
250630-01:15:09,311 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.257892s.
250630-01:15:10,962 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250630-01:15:10,963 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250630-01:15:10,967 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:15:10,967 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:15:11,477 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 6.530797s.
250630-01:15:12,228 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.173171s.
250630-01:15:12,870 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 19.874131s.
250630-01:15:13,7 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250630-01:15:13,8 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250630-01:15:13,13 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:15:13,14 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:15:14,964 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
250630-01:15:14,968 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:15:16,101 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 5.133297s.
250630-01:15:16,238 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.268866s.
250630-01:15:16,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
250630-01:15:16,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
250630-01:15:16,983 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:15:16,993 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:15:18,505 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.520423s.
250630-01:15:18,746 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 17.667552s.
250630-01:15:18,963 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
250630-01:15:18,964 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250630-01:15:18,967 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:15:18,968 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:15:19,27 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.057989s.
250630-01:15:19,535 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.53826s.
250630-01:15:20,452 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 7.435562s.
250630-01:15:20,632 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 9.663612s.
250630-01:15:20,932 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250630-01:15:20,936 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250630-01:15:20,936 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
250630-01:15:20,936 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250630-01:15:20,936 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:15:20,949 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250630-01:15:20,949 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250630-01:15:20,964 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:15:23,573 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.6220689999999998s.
250630-01:15:24,949 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/outliers".
250630-01:15:24,955 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250630-01:15:27,53 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.115162s.
250630-01:15:27,699 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.742065s.
250630-01:15:28,886 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 7.9362770000000005s.
250630-01:15:29,84 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
250630-01:15:29,84 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
250630-01:15:29,87 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250630-01:15:29,97 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250630-01:15:29,135 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.046011s.
250630-01:15:29,597 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.621907s.
250630-01:15:30,977 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250630-01:15:30,978 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250630-01:15:30,982 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250630-01:15:30,982 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250630-01:15:30,983 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250630-01:15:30,988 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:15:32,270 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.171976s.
250630-01:15:32,997 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
250630-01:15:33,2 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250630-01:15:34,475 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.46803s.
250630-01:15:35,114 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
250630-01:15:35,119 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250630-01:15:36,39 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.918997s.
250630-01:15:37,37 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/fsl_bet".
250630-01:15:37,39 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.056325s.
250630-01:15:37,40 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250630-01:15:38,729 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.738971s.
250630-01:15:39,40 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
250630-01:15:39,40 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
250630-01:15:39,45 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250630-01:15:39,49 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250630-01:15:39,970 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.92432s.
250630-01:15:40,372 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.322188s.
250630-01:15:41,82 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
250630-01:15:41,85 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
250630-01:15:41,88 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250630-01:15:41,90 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250630-01:15:42,555 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.45824s.
250630-01:15:43,154 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
250630-01:15:43,158 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250630-01:15:44,113 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.954465s.
250630-01:15:45,46 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
250630-01:15:45,58 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250630-01:16:50,926 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 89.956822s.
250630-01:16:53,253 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
250630-01:16:53,275 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:17:05,994 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 84.905198s.
250630-01:17:07,154 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
250630-01:17:07,162 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:09,632 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 2.469619s.
250630-01:17:11,206 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
250630-01:17:11,207 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 94.164536s.
250630-01:17:11,218 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:11,259 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.039189s.
250630-01:17:13,145 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250630-01:17:13,145 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
250630-01:17:13,158 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:13,173 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:14,5 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.83082s.
250630-01:17:15,127 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
250630-01:17:15,132 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:15,152 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.019438s.
250630-01:17:17,98 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250630-01:17:17,104 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:17,239 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 4.079229s.
250630-01:17:19,106 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
250630-01:17:19,115 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:20,196 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.080565s.
250630-01:17:20,709 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.026973s.
250630-01:17:21,246 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
250630-01:17:21,248 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250630-01:17:21,250 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:21,268 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:21,286 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.035056s.
250630-01:17:22,276 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 129.25976s.
250630-01:17:23,334 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
250630-01:17:23,335 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
250630-01:17:23,346 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:17:23,382 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:23,734 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.464909s.
250630-01:17:23,836 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 98.772372s.
250630-01:17:24,414 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.030364s.
250630-01:17:25,154 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
250630-01:17:25,156 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250630-01:17:25,156 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
250630-01:17:25,165 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:25,168 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:25,169 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:25,207 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.040732s.
250630-01:17:25,977 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.80694s.
250630-01:17:27,140 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
250630-01:17:27,148 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250630-01:17:27,149 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:27,154 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:27,170 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.020067s.
250630-01:17:27,516 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.345746s.
250630-01:17:29,155 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
250630-01:17:29,163 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
250630-01:17:29,168 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250630-01:17:29,200 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250630-01:17:29,260 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.090305s.
250630-01:17:29,592 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.436606s.
250630-01:17:30,6 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.798555s.
250630-01:17:31,100 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
250630-01:17:31,103 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
250630-01:17:31,104 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
250630-01:17:31,105 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250630-01:17:31,127 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250630-01:17:31,128 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250630-01:17:35,984 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 124.99316s.
250630-01:17:37,185 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
250630-01:17:37,206 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250630-01:17:42,886 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 11.757183s.
250630-01:17:43,178 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250630-01:17:43,182 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:17:45,154 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.970243s.
250630-01:17:46,690 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 15.584764s.
250630-01:17:47,151 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 16.022008s.
250630-01:17:47,193 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
250630-01:17:47,213 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:47,216 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001329s.
250630-01:17:47,398 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
250630-01:17:47,399 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
250630-01:17:47,404 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:47,409 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:47,410 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000808s.
250630-01:17:47,449 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.043836s.
250630-01:17:47,591 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
250630-01:17:47,594 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:47,633 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.037673s.
250630-01:17:49,172 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
250630-01:17:49,187 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:49,189 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001008s.
250630-01:17:49,397 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
250630-01:17:49,406 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
250630-01:17:49,417 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:49,434 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:49,437 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001639s.
250630-01:17:49,449 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.03038s.
250630-01:17:49,659 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
250630-01:17:49,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
250630-01:17:49,673 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:49,679 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:49,680 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000848s.
250630-01:17:49,699 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.025174s.
250630-01:17:49,876 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
250630-01:17:49,879 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:49,908 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.027729s.
250630-01:17:51,122 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
250630-01:17:51,133 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:17:51,135 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000764s.
250630-01:17:51,309 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
250630-01:17:51,309 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
250630-01:17:51,310 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
250630-01:17:51,312 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250630-01:17:51,317 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:51,319 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:51,350 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.036452s.
250630-01:17:53,187 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
250630-01:17:53,194 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:55,38 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 3.720397s.
250630-01:17:55,159 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 3.839113s.
250630-01:17:55,441 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.246596s.
250630-01:17:57,200 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
250630-01:17:57,201 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
250630-01:17:57,202 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
250630-01:17:57,209 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:57,210 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:57,215 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250630-01:17:59,484 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.27007s.
250630-01:17:59,657 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.445319s.
250630-01:17:59,760 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.543187s.
250630-01:18:01,178 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
250630-01:18:01,179 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
250630-01:18:01,184 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
250630-01:18:01,187 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:01,187 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:01,189 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000375s.
250630-01:18:01,189 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000367s.
250630-01:18:01,205 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:01,207 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000374s.
250630-01:18:03,158 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
250630-01:18:03,159 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
250630-01:18:03,159 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
250630-01:18:03,172 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:03,172 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:03,173 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000232s.
250630-01:18:03,173 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:18:03,174 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000335s.
250630-01:18:03,174 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000262s.
250630-01:18:05,173 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
250630-01:18:05,175 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
250630-01:18:05,175 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
250630-01:18:05,179 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:05,179 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:05,181 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:05,550 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:05,550 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:05,550 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:07,508 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 74.223459s.
250630-01:18:08,639 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
250630-01:18:08,646 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 3.463791s.
250630-01:18:08,648 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
250630-01:18:08,648 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-2_bold.html
250630-01:18:08,649 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 3.469046s.
250630-01:18:08,649 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 3.4682209999999998s.
250630-01:18:09,176 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
250630-01:18:09,181 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:09,186 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
250630-01:18:09,187 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
250630-01:18:09,194 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
250630-01:18:09,196 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:09,197 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:09,198 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:09,199 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:18:09,199 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:09,207 cli WARNING:
Building bold report: no exclude index was found
250630-01:18:09,286 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
250630-01:18:09,287 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
250630-01:18:09,287 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.090038s.
250630-01:18:09,288 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.088559s.
250630-01:18:09,296 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
250630-01:18:09,297 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.096389s.
250630-01:18:11,158 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
250630-01:18:11,162 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:11,170 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.007531s.
250630-01:18:11,337 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
250630-01:18:11,344 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:11,346 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000439s.
250630-01:18:11,513 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
250630-01:18:11,516 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:11,517 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000429s.
250630-01:18:11,702 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
250630-01:18:11,705 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:11,706 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000416s.
250630-01:18:11,873 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
250630-01:18:11,883 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:11,884 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000455s.
250630-01:18:12,54 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
250630-01:18:12,57 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:18:12,64 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.006276s.
250630-01:18:12,235 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:18:12,241 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:18:12,247 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:18:12,248 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:12,254 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:12,256 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:17,995 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 5.737128s.
250630-01:18:18,191 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 5.934063s.
250630-01:18:18,220 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 5.970294s.
250630-01:18:19,402 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:18:19,404 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250630-01:18:19,405 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250630-01:18:19,406 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:18:19,408 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250630-01:18:19,408 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250630-01:18:19,409 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:18:19,411 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250630-01:18:19,411 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250630-01:18:29,443 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 20.260745s.
250630-01:18:31,180 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
250630-01:18:31,185 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250630-01:18:32,226 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 68.877703s.
250630-01:18:33,168 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/segmentation".
250630-01:18:33,176 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
250630-01:18:33,180 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:33,180 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250630-01:18:35,169 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:18:35,170 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:18:35,172 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:35,174 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:37,311 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 6.124465s.
250630-01:18:37,559 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 2.385222s.
250630-01:18:37,817 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.641614s.
250630-01:18:39,170 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
250630-01:18:39,174 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:18:39,356 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.180919s.
250630-01:18:39,511 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
250630-01:18:39,512 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
250630-01:18:39,514 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
250630-01:18:39,515 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250630-01:18:39,516 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250630-01:18:39,518 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250630-01:18:44,11 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 4.494612s.
250630-01:18:45,31 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 5.511783s.
250630-01:18:45,207 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:18:45,210 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:18:46,329 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.117959s.
250630-01:18:47,187 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:18:47,188 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250630-01:18:47,188 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250630-01:18:47,189 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:18:47,190 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250630-01:18:47,190 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250630-01:18:47,191 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:18:47,192 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250630-01:18:47,192 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250630-01:18:51,480 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 18.299182s.
250630-01:18:53,192 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
250630-01:18:53,197 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250630-01:18:55,660 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 16.14272s.
250630-01:18:58,236 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.038485s.
250630-01:18:59,196 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
250630-01:18:59,200 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:18:59,374 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.173499s.
250630-01:18:59,535 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
250630-01:18:59,536 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
250630-01:18:59,536 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
250630-01:18:59,538 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250630-01:18:59,540 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250630-01:18:59,540 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250630-01:19:00,117 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 82.909305s.
250630-01:19:01,212 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
250630-01:19:01,216 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:19:03,207 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:19:03,213 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:19:05,413 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 2.197578s.
250630-01:19:05,563 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 6.021825s.
250630-01:19:07,219 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:19:07,220 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:19:07,223 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:19:07,224 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250630-01:19:08,672 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.447047s.
250630-01:19:09,300 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.075s.
250630-01:19:10,555 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 11.012522s.
250630-01:19:11,209 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250630-01:19:11,210 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250630-01:19:11,210 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250630-01:19:11,211 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250630-01:19:11,212 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250630-01:19:11,212 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250630-01:19:11,213 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250630-01:19:11,214 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250630-01:19:11,214 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250630-01:19:15,32 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 15.493343s.
250630-01:19:18,656 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 17.43915s.
250630-01:19:19,204 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/segmentation".
250630-01:19:19,208 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250630-01:23:34,547 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 301.364609s.
250630-01:23:35,621 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/segmentation".
250630-01:23:35,629 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250630-01:24:09,365 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 290.155532s.
250630-01:24:09,583 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
250630-01:24:09,590 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotSegmentation".
250630-01:24:09,591 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
250630-01:24:09,591 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
250630-01:24:09,596 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
250630-01:24:09,606 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250630-01:24:09,612 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250630-01:24:09,613 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250630-01:24:09,641 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250630-01:24:09,654 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250630-01:24:13,406 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 3.793683s.
250630-01:24:13,796 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 4.130742s.
250630-01:24:15,721 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
250630-01:24:15,722 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
250630-01:24:15,732 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250630-01:24:15,732 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250630-01:24:19,767 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 10.124813s.
250630-01:24:20,48 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 10.43303s.
250630-01:24:21,568 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
250630-01:24:21,578 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250630-01:24:21,781 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.20223s.
250630-01:24:21,961 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
250630-01:24:21,961 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
250630-01:24:21,964 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250630-01:24:21,965 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250630-01:24:26,31 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 16.417481s.
250630-01:24:27,454 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 5.487585s.
250630-01:24:27,670 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
250630-01:24:27,690 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250630-01:24:29,597 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
250630-01:24:29,653 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:24:29,654 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000295s.
250630-01:24:31,601 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
250630-01:24:31,609 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:24:31,611 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000236s.
250630-01:24:32,188 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 16.454882s.
250630-01:24:32,330 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 16.596777s.
250630-01:24:33,579 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
250630-01:24:33,595 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:24:33,597 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000865s.
250630-01:24:33,763 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
250630-01:24:33,778 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:24:33,780 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000986s.
250630-01:24:35,584 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
250630-01:24:35,584 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
250630-01:24:35,588 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:24:35,588 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:24:35,980 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport/sub-02_T1w.html
250630-01:24:35,981 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.392128s.
250630-01:24:35,988 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport/sub-01_T1w.html
250630-01:24:35,989 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.400098s.
250630-01:24:37,591 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
250630-01:24:37,594 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:24:37,595 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000499s.
250630-01:24:37,761 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
250630-01:24:37,771 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:24:37,773 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000449s.
250630-01:24:37,986 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 16.021151s.
250630-01:24:39,999 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 12.308164s.
250630-01:27:46,27 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 250.397275s.
250630-01:27:47,776 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
250630-01:27:47,776 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
250630-01:27:47,786 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250630-01:27:47,787 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250630-01:27:49,557 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.7694290000000001s.
250630-01:27:49,782 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
250630-01:27:49,799 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250630-01:27:53,32 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 5.244337s.
250630-01:27:53,792 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
250630-01:27:53,800 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250630-01:27:53,802 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000344s.
250630-01:28:01,53 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 11.252129s.
250630-01:28:01,778 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
250630-01:28:01,794 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250630-01:28:01,796 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000985s.
250630-01:28:03,777 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
250630-01:28:03,782 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250630-01:28:04,160 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport/sub-03_T1w.html
250630-01:28:04,161 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.377698s.
250630-01:28:05,784 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
250630-01:28:05,787 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250630-01:28:05,788 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000424s.
250630-01:28:07,762 cli IMPORTANT:
Participant level finished successfully.
250630-01:28:07,762 cli INFO:
Generating BIDS derivatives metadata.
250630-01:28:07,763 cli INFO:
MRIQC completed.
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
Group-level Analysis#
%%bash
mriqc ds000102 \
MRIQC \
group \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
MRIQC Visual Reports#
MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.
Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.
Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.
These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.
Anatomical Report#
%%capture
! pip install beautifulsoup4
from bs4 import BeautifulSoup, element, Doctype
from IPython.display import HTML, display
with open('./MRIQC/sub-01_T1w.html') as f:
soup = BeautifulSoup(f, 'html.parser')
# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav', 'head']):
tag.decompose()
with open("./soup.txt", "w") as f:
f.write(str(soup))
# print(str(soup))
display(HTML(str(soup)))
MRIQC: individual T1w report
Summary
- BIDS filename: sub-01_T1w.
- Date and time: 2025-06-30, 01:24.
- MRIQC version: 22.0.6.
- Workflow details:
- Detected a zero-filled frame, has the original image been rotated?
Visual reports
Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Functional Report#
with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
soup = BeautifulSoup(f, 'html.parser')
for tag in soup(['script', 'style', 'button', 'nav', 'head']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual bold report
Summary
- BIDS filename: sub-02_task-flanker_run-1_bold.
- Date and time: 2025-06-30, 01:18.
- MRIQC version: 22.0.6.
- Workflow details:
- Framewise Displacement was computed using
3dvolreg(AFNI) - Framewise Displacement threshold was defined at 0.200000 mm
- Framewise Displacement was computed using
Visual reports
BOLD average
Standard deviation map
FMRI summary plot
Zoomed-in BOLD average
Background noise
Calculated brain mask
Approximate spatial normalization
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Group functional report#
with open('./MRIQC/group_bold.html', 'r') as f:
html = f.read()
display(HTML(html))
MRIQC: group bold report
Summary
- Date and time: 2025-06-30, 01:28.
- MRIQC version: 22.0.6.