MRIQC#
Author: Monika Doerig
Citation:
MRIQC:
Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661
The documentation of this project is found here.
Data from OpenNeuro: Flanker Dataset
Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null
Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.
Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434
Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046
Output CPU information#
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : GenuineIntel
model name : Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz
Load MRIQC#
import module
await module.purge()
await module.load('mriqc/22.0.6')
await module.list()
['mriqc/22.0.6']
!mriqc -help
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
[--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
[--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
[--bids-database-dir PATH] [--nprocs NPROCS]
[--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
[--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
[--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
[--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
[--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
[--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
[--fd_thres FD_THRES] [--deoblique] [--despike]
[--start-idx START_IDX] [--stop-idx STOP_IDX]
bids_dir output_dir {participant,group} [{participant,group} ...]
mriqc: error: argument -h/--help: ignored explicit argument 'elp'
Data preparation#
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03
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[INFO ] scanning for unlocked files (this may take some time)
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| datalad siblings -d "/home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102" enable -s s3-PRIVATE
install(ok): /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102 (dataset)
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get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01 (directory)
get(ok): sub-02 (directory)
get(ok): sub-03 (directory)
action summary:
get (ok: 12)
Running MRIQC#
The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.
Positional Arguments#
bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.analysis_level: Possible choices: participant, group
Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.
-v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.
Options to handle performance#
--nprocs, --n_procs, --n_cpus, -n-cpusMaximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.--mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.
Instrumental options#
-w, --work-dir: Path where intermediate results should be stored.--verbose-reports: Generate verbose HTML reports with additional details--no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.
!
Warning:
--no-sub and --notrack may be necessary in environments with limited internet access, where automatic submission of quality metrics to MRIQC's web server and tracking data to NiPreps developers may fail or trigger runtime errors.
Participant-level Analysis#
%%bash
# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir
# Run MRIQC
mriqc ds000102 \
MRIQC \
participant \
--participant-label sub-01 sub-02 sub-03 \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
250605-21:51:26,547 cli IMPORTANT:
Running MRIQC version 22.0.6:
* BIDS dataset path: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102.
* Output folder: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC.
* Analysis levels: ['participant'].
250605-21:51:55,431 nipype.workflow INFO:
Building functional MRIQC workflow for files: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
250605-21:52:03,944 nipype.workflow INFO:
Building anatomical MRIQC workflow for 3 NIfTI files..
250605-21:52:19,73 nipype.workflow INFO:
Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
250605-21:52:19,715 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datalad_get".
250605-21:52:19,716 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
250605-21:52:19,719 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250605-21:52:19,720 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250605-21:52:19,732 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datalad_get".
250605-21:52:19,736 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250605-21:52:19,739 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
250605-21:52:19,744 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250605-21:52:19,746 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:19,746 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:19,883 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.109186s.
250605-21:52:20,68 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.285746s.
250605-21:52:20,84 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
250605-21:52:20,86 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:21,238 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.150833s.
250605-21:52:21,361 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
250605-21:52:21,361 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250605-21:52:21,362 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:21,363 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:21,447 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.08351s.
250605-21:52:21,566 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
250605-21:52:21,572 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:21,674 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.309503s.
250605-21:52:22,353 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.779923s.
250605-21:52:22,474 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250605-21:52:22,476 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:22,593 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
250605-21:52:22,594 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:22,709 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.114238s.
250605-21:52:22,797 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.319491s.
250605-21:52:22,839 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
250605-21:52:22,842 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:23,597 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.754508s.
250605-21:52:23,715 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
250605-21:52:23,716 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250605-21:52:23,717 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:23,720 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:23,796 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.078061s.
250605-21:52:23,915 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
250605-21:52:23,917 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:24,17 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.295755s.
250605-21:52:24,688 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.770127s.
250605-21:52:24,919 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
250605-21:52:24,920 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250605-21:52:24,921 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:24,921 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:25,10 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.0879s.
250605-21:52:25,131 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
250605-21:52:25,133 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:25,229 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.306737s.
250605-21:52:25,904 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.770219s.
250605-21:52:26,28 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
250605-21:52:26,29 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250605-21:52:26,30 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-21:52:26,31 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250605-21:52:26,115 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.083618s.
250605-21:52:26,245 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
250605-21:52:26,247 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:26,343 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.311255s.
250605-21:52:27,15 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.767324s.
250605-21:52:27,240 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/sanitize".
250605-21:52:27,243 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:27,255 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
250605-21:52:27,265 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:27,269 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/sanitize".
250605-21:52:27,274 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:27,371 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.097605s.
250605-21:52:29,272 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.028311s.
250605-21:52:29,415 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.139217s.
250605-21:52:29,459 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
250605-21:52:29,461 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:29,515 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.053835s.
250605-21:52:31,266 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/sanitize".
250605-21:52:31,266 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
250605-21:52:31,266 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
250605-21:52:31,268 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:31,269 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250605-21:52:31,270 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:52:33,298 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.029681s.
250605-21:52:33,326 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.056633s.
250605-21:52:35,262 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
250605-21:52:35,263 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
250605-21:52:35,266 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:52:35,266 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:52:50,669 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 30.926706s.
250605-21:52:50,669 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 30.926845s.
250605-21:52:50,674 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 30.918525s.
250605-21:52:51,287 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/conform".
250605-21:52:51,287 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
250605-21:52:51,288 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/conform".
250605-21:52:51,290 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250605-21:52:51,290 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:51,291 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250605-21:52:52,182 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.890401s.
250605-21:52:53,277 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
250605-21:52:53,280 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:54,87 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.805102s.
250605-21:52:55,295 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
250605-21:52:55,297 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250605-21:52:56,926 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 5.63485s.
250605-21:52:56,932 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 5.639555s.
250605-21:52:56,956 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.657867s.
250605-21:52:57,325 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
250605-21:52:57,326 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
250605-21:52:57,326 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
250605-21:52:57,336 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250605-21:52:57,336 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250605-21:52:57,336 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250605-21:52:58,209 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.872801s.
250605-21:52:59,316 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
250605-21:52:59,320 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:52:59,479 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.1419420000000002s.
250605-21:53:01,290 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_clip".
250605-21:53:01,300 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250605-21:53:16,895 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 17.573734s.
250605-21:53:17,317 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMask".
250605-21:53:17,320 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250605-21:53:18,624 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.303066s.
250605-21:53:19,307 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNoise".
250605-21:53:19,310 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:53:22,21 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 46.754132s.
250605-21:53:23,359 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
250605-21:53:23,369 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250605-21:53:29,807 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 28.506481s.
250605-21:53:29,932 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 32.594588s.
250605-21:53:31,340 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
250605-21:53:31,340 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
250605-21:53:31,343 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250605-21:53:31,343 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:53:32,914 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.570039s.
250605-21:53:33,326 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
250605-21:53:33,329 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:53:36,706 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 3.37597s.
250605-21:53:37,331 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
250605-21:53:37,345 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:53:39,560 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 20.249716s.
250605-21:53:41,330 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
250605-21:53:41,333 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:53:45,834 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 22.464384s.
250605-21:53:47,339 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
250605-21:53:47,342 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:53:47,701 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 16.356866s.
250605-21:53:48,12 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 6.678829s.
250605-21:53:49,338 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
250605-21:53:49,339 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
250605-21:53:49,342 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:53:49,342 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:53:53,830 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 4.487086s.
250605-21:53:55,345 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
250605-21:53:55,348 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:53:59,474 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 4.124703s.
250605-21:54:01,351 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
250605-21:54:01,353 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250605-21:54:33,131 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 121.859727s.
250605-21:54:33,390 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
250605-21:54:33,405 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250605-21:54:35,854 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.448795s.
250605-21:54:37,395 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
250605-21:54:37,397 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:54:38,481 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 123.214192s.
250605-21:54:39,396 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
250605-21:54:39,399 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:55:08,954 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 31.334459s.
250605-21:55:09,220 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 29.583059s.
250605-21:55:09,429 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
250605-21:55:09,430 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
250605-21:55:09,433 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:55:09,433 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:55:09,438 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003951s.
250605-21:55:11,434 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/mean".
250605-21:55:11,442 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:55:13,144 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.699693s.
250605-21:55:13,433 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250605-21:55:13,436 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:55:14,403 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.965725s.
250605-21:55:15,436 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
250605-21:55:15,440 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:55:17,903 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.462493s.
250605-21:55:19,441 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:19,444 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:20,206 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.760201s.
250605-21:55:21,451 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
250605-21:55:21,453 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:55:21,457 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003379s.
250605-21:55:23,448 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/mean".
250605-21:55:23,451 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:55:24,294 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 0.841959s.
250605-21:55:25,448 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250605-21:55:25,451 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:55:26,346 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.894805s.
250605-21:55:27,456 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
250605-21:55:27,459 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:55:28,982 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.521551s.
250605-21:55:29,451 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:29,456 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:30,329 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.871614s.
250605-21:55:31,454 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:31,457 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:31,786 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 114.440459s.
250605-21:55:32,217 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.758863s.
250605-21:55:33,472 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
250605-21:55:33,472 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/mean".
250605-21:55:33,475 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:55:33,475 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:55:33,479 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003603s.
250605-21:55:34,269 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 0.792808s.
250605-21:55:35,458 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250605-21:55:35,459 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
250605-21:55:35,467 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:55:35,470 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:55:36,449 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.978061s.
250605-21:55:36,943 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 27.507777s.
250605-21:55:36,994 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.525769s.
250605-21:55:37,463 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:37,464 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:37,465 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250605-21:55:37,479 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:37,485 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:37,485 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250605-21:55:38,298 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.811754s.
250605-21:55:38,394 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.90816s.
250605-21:55:38,403 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.923162s.
250605-21:55:39,464 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
250605-21:55:39,465 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
250605-21:55:39,466 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
250605-21:55:39,466 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250605-21:55:39,468 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250605-21:55:39,468 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250605-21:55:50,135 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 120.791225s.
250605-21:55:50,159 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 122.815775s.
250605-21:55:51,492 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
250605-21:55:51,493 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/mean".
250605-21:55:51,495 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:55:51,496 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:55:51,500 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.00417s.
250605-21:55:52,350 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 0.853299s.
250605-21:55:53,480 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250605-21:55:53,481 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
250605-21:55:53,484 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:55:53,484 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:55:54,622 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.137715s.
250605-21:55:55,145 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.660705s.
250605-21:55:55,485 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
250605-21:55:55,486 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/mean".
250605-21:55:55,488 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:55:55,490 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:55:55,492 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.003267s.
250605-21:55:56,305 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 0.813063s.
250605-21:55:57,495 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250605-21:55:57,496 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
250605-21:55:57,498 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:55:57,498 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:55:58,443 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.943769s.
250605-21:55:59,132 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.632906s.
250605-21:55:59,486 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
250605-21:55:59,486 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250605-21:55:59,489 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:55:59,489 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:00,742 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.051827s.
250605-21:56:01,274 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.783498s.
250605-21:56:01,491 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250605-21:56:01,491 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250605-21:56:01,494 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:01,494 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:03,130 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 121.775322s.
250605-21:56:03,503 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
250605-21:56:03,506 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250605-21:56:03,513 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.004841s.
250605-21:56:05,507 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/mean".
250605-21:56:05,510 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250605-21:56:06,159 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 4.66392s.
250605-21:56:06,281 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 4.786475s.
250605-21:56:06,609 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.098145s.
250605-21:56:07,494 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250605-21:56:07,495 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
250605-21:56:07,495 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250605-21:56:07,497 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250605-21:56:07,498 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250605-21:56:07,499 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:08,426 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 0.928915s.
250605-21:56:09,232 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 1.733469s.
250605-21:56:09,507 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
250605-21:56:09,508 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250605-21:56:09,511 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:09,511 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:56:10,464 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.952141s.
250605-21:56:10,611 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.09944s.
250605-21:56:11,505 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250605-21:56:11,505 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250605-21:56:11,508 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:11,508 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:12,95 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.595262s.
250605-21:56:13,514 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250605-21:56:13,518 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:16,135 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 4.626515s.
250605-21:56:16,360 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 4.850718s.
250605-21:56:17,523 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
250605-21:56:17,523 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250605-21:56:17,525 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:56:17,525 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:18,386 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.859905s.
250605-21:56:18,676 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.156752s.
250605-21:56:18,678 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.152174s.
250605-21:56:19,509 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250605-21:56:19,510 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250605-21:56:19,510 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250605-21:56:19,511 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:19,512 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:19,512 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:24,256 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.743145s.
250605-21:56:24,324 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 4.812275s.
250605-21:56:24,978 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 5.46523s.
250605-21:56:25,511 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
250605-21:56:25,512 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250605-21:56:25,514 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:25,514 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:56:25,515 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250605-21:56:25,520 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:25,997 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.481828s.
250605-21:56:27,526 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250605-21:56:27,529 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:28,133 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.763496s.
250605-21:56:29,552 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250605-21:56:29,555 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:30,200 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 4.678691s.
250605-21:56:31,530 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
250605-21:56:31,533 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:32,277 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 4.747136s.
250605-21:56:32,450 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.914577s.
250605-21:56:33,537 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250605-21:56:33,538 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250605-21:56:33,541 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:33,542 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:56:34,109 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.552634s.
250605-21:56:34,868 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.324989s.
250605-21:56:35,542 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250605-21:56:35,542 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250605-21:56:35,545 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:35,545 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:38,761 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.219125s.
250605-21:56:39,566 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
250605-21:56:39,570 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250605-21:56:40,339 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 4.793079s.
250605-21:56:40,497 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.950812s.
250605-21:56:40,605 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.033444s.
250605-21:56:41,543 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250605-21:56:41,543 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250605-21:56:41,544 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250605-21:56:41,545 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:41,546 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:56:41,548 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:43,489 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 1.942084s.
250605-21:56:45,722 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250605-21:56:45,725 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250605-21:56:50,61 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 8.510743s.
250605-21:56:51,718 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250605-21:56:51,740 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-21:56:52,667 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 11.120889s.
250605-21:56:53,610 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
250605-21:56:53,624 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:57:00,196 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 6.570298s.
250605-21:57:00,510 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 14.783962s.
250605-21:57:01,701 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
250605-21:57:01,702 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
250605-21:57:01,718 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-21:57:01,719 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-21:57:07,35 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 5.310282s.
250605-21:57:07,764 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
250605-21:57:07,768 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-21:57:07,864 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.094829s.
250605-21:57:09,805 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250605-21:57:09,819 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-21:57:12,563 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 20.819699s.
250605-21:57:13,775 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250605-21:57:13,795 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:57:15,467 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 13.741515s.
250605-21:57:17,691 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250605-21:57:17,708 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-21:57:18,307 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 8.486312999999999s.
250605-21:57:19,743 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250605-21:57:19,764 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-21:57:22,515 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 8.712165s.
250605-21:57:23,762 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
250605-21:57:23,768 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:57:28,386 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 4.617397s.
250605-21:57:29,616 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
250605-21:57:29,620 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-21:57:31,575 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.9538470000000001s.
250605-21:57:33,433 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 13.668576s.
250605-21:57:33,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
250605-21:57:33,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
250605-21:57:33,608 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-21:57:33,612 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-21:57:33,638 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.029166s.
250605-21:57:35,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250605-21:57:35,610 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-21:57:36,813 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.19381s.
250605-21:57:37,689 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250605-21:57:37,700 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:57:41,943 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 6.332694s.
250605-21:57:43,780 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250605-21:57:43,819 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-21:57:47,158 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 9.456711s.
250605-21:57:47,918 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250605-21:57:47,941 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-21:57:59,350 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 11.40116s.
250605-21:57:59,783 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
250605-21:57:59,803 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:58:03,115 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 3.303887s.
250605-21:58:03,803 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
250605-21:58:03,821 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-21:58:07,365 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.542611s.
250605-21:58:07,741 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
250605-21:58:07,749 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-21:58:13,785 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 6.034659s.
250605-21:58:15,682 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
250605-21:58:15,687 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-21:58:15,723 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.034738s.
250605-21:58:17,679 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250605-21:58:17,683 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-21:58:25,647 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.963188s.
250605-21:58:27,766 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250605-21:58:27,770 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:58:34,717 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.945714s.
250605-21:58:35,895 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250605-21:58:35,915 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-21:59:26,101 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 102.278773s.
250605-21:59:27,807 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250605-21:59:27,812 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-21:59:33,843 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 6.029979s.
250605-21:59:34,365 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 136.65559s.
250605-21:59:35,775 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
250605-21:59:35,777 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
250605-21:59:35,778 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:59:35,782 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-21:59:37,250 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 237.781259s.
250605-21:59:37,517 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.737951s.
250605-21:59:37,776 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 238.306455s.
250605-21:59:37,788 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
250605-21:59:37,788 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
250605-21:59:37,791 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:59:37,792 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:59:38,324 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.541044s.
250605-21:59:39,541 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 240.072975s.
250605-21:59:39,768 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
250605-21:59:39,768 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
250605-21:59:39,771 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:59:39,771 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:59:39,779 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
250605-21:59:39,783 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:59:45,84 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.291783s.
250605-21:59:45,822 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
250605-21:59:45,827 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-21:59:47,741 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.968817s.
250605-21:59:49,785 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
250605-21:59:49,790 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:59:51,999 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 14.200266s.
250605-21:59:53,388 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 13.60469s.
250605-21:59:53,427 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.599176s.
250605-21:59:53,788 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
250605-21:59:53,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
250605-21:59:53,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
250605-21:59:53,792 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-21:59:53,792 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-21:59:53,792 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250605-21:59:54,269 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 14.223558s.
250605-21:59:55,794 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
250605-21:59:55,799 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-21:59:59,526 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 5.732354s.
250605-21:59:59,805 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
250605-21:59:59,808 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-22:00:01,250 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 7.457125s.
250605-22:00:01,798 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
250605-22:00:01,802 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-22:00:03,868 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 14.075921s.
250605-22:00:03,963 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.160524s.
250605-22:00:04,505 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 4.695886s.
250605-22:00:05,806 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
250605-22:00:05,807 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250605-22:00:05,807 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250605-22:00:05,809 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-22:00:05,810 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-22:00:05,810 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-22:00:05,920 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.109791s.
250605-22:00:07,806 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250605-22:00:07,810 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:00:07,911 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 14.117576s.
250605-22:00:08,803 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 92.8866s.
250605-22:00:09,814 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250605-22:00:09,815 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
250605-22:00:09,818 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-22:00:09,819 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-22:00:10,248 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 4.436423s.
250605-22:00:10,400 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.589151s.
250605-22:00:11,626 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.805661s.
250605-22:00:11,866 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
250605-22:00:11,867 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
250605-22:00:11,867 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
250605-22:00:11,877 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-22:00:11,877 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-22:00:11,877 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-22:00:11,936 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.058099s.
250605-22:00:12,467 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 16.66723s.
250605-22:00:13,597 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.718239s.
250605-22:00:13,819 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 1.941189s.
250605-22:00:13,839 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250605-22:00:13,839 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250605-22:00:13,840 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250605-22:00:13,843 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-22:00:13,850 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-22:00:13,851 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:00:15,850 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250605-22:00:15,866 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250605-22:00:16,139 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 6.313266s.
250605-22:00:17,861 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
250605-22:00:17,865 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250605-22:00:18,588 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.738301s.
250605-22:00:18,930 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.064432s.
250605-22:00:19,839 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/outliers".
250605-22:00:19,839 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
250605-22:00:19,842 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250605-22:00:19,844 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250605-22:00:21,462 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 1.618868s.
250605-22:00:21,822 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
250605-22:00:21,825 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250605-22:00:21,851 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.025103s.
250605-22:00:21,926 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 2.0811s.
250605-22:00:21,968 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 6.100617s.
250605-22:00:22,73 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 8.221963s.
250605-22:00:23,841 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250605-22:00:23,841 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250605-22:00:23,843 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
250605-22:00:23,843 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250605-22:00:23,844 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250605-22:00:23,852 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250605-22:00:23,852 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250605-22:00:23,854 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:00:25,48 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.19501s.
250605-22:00:25,835 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
250605-22:00:25,839 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250605-22:00:26,614 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.773111s.
250605-22:00:27,852 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/fsl_bet".
250605-22:00:27,857 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250605-22:00:28,635 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 4.781788s.
250605-22:00:28,814 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 4.969219s.
250605-22:00:29,892 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
250605-22:00:29,893 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
250605-22:00:29,896 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250605-22:00:29,897 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250605-22:00:30,748 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.849479s.
250605-22:00:31,89 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.191758s.
250605-22:00:31,845 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
250605-22:00:31,845 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
250605-22:00:31,848 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250605-22:00:31,849 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250605-22:00:33,174 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.324913s.
250605-22:00:33,828 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
250605-22:00:33,834 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250605-22:00:34,568 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.732459s.
250605-22:00:35,848 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
250605-22:00:35,851 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250605-22:01:19,775 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 65.922141s.
250605-22:01:20,606 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 56.750089s.
250605-22:01:21,910 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
250605-22:01:21,910 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
250605-22:01:21,914 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:01:21,915 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:01:40,543 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 92.731309s.
250605-22:01:42,28 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
250605-22:01:42,50 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250605-22:01:49,136 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 77.286246s.
250605-22:01:50,172 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
250605-22:01:50,252 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:01:55,905 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 5.639507s.
250605-22:01:56,565 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 88.706379s.
250605-22:01:57,932 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
250605-22:01:57,940 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250605-22:01:57,942 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:01:57,961 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:01:57,980 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.036806s.
250605-22:01:59,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
250605-22:02:00,8 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:02:00,719 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.708497s.
250605-22:02:01,420 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 85.567773s.
250605-22:02:01,649 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 3.686242s.
250605-22:02:01,997 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
250605-22:02:01,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250605-22:02:02,0 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
250605-22:02:02,5 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:02:02,15 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:02:02,32 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.026656s.
250605-22:02:02,32 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:02,680 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.663188s.
250605-22:02:03,179 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.144699s.
250605-22:02:03,955 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
250605-22:02:03,956 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250605-22:02:03,956 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
250605-22:02:03,958 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:02:03,960 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:03,963 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:02:03,976 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.015902s.
250605-22:02:04,589 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.624896s.
250605-22:02:05,665 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.704453s.
250605-22:02:05,939 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
250605-22:02:05,940 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250605-22:02:05,941 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
250605-22:02:05,944 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:05,946 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:02:05,947 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:02:05,976 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.028441s.
250605-22:02:06,621 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.672635s.
250605-22:02:06,870 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.925032s.
250605-22:02:07,944 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
250605-22:02:07,946 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250605-22:02:07,946 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
250605-22:02:07,949 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:02:07,950 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:07,959 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250605-22:02:07,972 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.022349s.
250605-22:02:08,525 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.564781s.
250605-22:02:09,773 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.8226360000000001s.
250605-22:02:09,948 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
250605-22:02:09,949 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250605-22:02:09,949 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
250605-22:02:09,960 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250605-22:02:09,961 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:09,961 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250605-22:02:09,978 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.01765s.
250605-22:02:10,916 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 0.953686s.
250605-22:02:11,945 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
250605-22:02:11,945 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
250605-22:02:11,948 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250605-22:02:11,949 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250605-22:02:20,208 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 8.25834s.
250605-22:02:20,972 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 9.02197s.
250605-22:02:21,957 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
250605-22:02:21,968 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:21,971 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001464s.
250605-22:02:22,138 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
250605-22:02:22,139 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
250605-22:02:22,142 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:22,149 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:22,150 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000743s.
250605-22:02:22,173 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.030544s.
250605-22:02:22,295 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
250605-22:02:22,299 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:22,336 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.035745s.
250605-22:02:22,879 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 12.917084s.
250605-22:02:22,942 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 61.024914s.
250605-22:02:24,4 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
250605-22:02:24,7 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:24,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
250605-22:02:24,21 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:24,23 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000841s.
250605-22:02:24,194 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
250605-22:02:24,196 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
250605-22:02:24,199 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:24,206 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:24,208 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000726s.
250605-22:02:24,222 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.022388s.
250605-22:02:24,357 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
250605-22:02:24,358 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
250605-22:02:24,361 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:24,367 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:24,369 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000894s.
250605-22:02:24,382 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.019459s.
250605-22:02:24,504 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
250605-22:02:24,508 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:24,538 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.029434s.
250605-22:02:26,94 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
250605-22:02:26,114 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:02:26,123 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000752s.
250605-22:02:26,281 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
250605-22:02:26,282 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
250605-22:02:26,282 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
250605-22:02:26,285 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250605-22:02:26,288 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:26,289 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:26,316 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.029734s.
250605-22:02:27,962 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
250605-22:02:27,975 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:29,279 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.988894s.
250605-22:02:29,304 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 3.01481s.
250605-22:02:29,960 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
250605-22:02:29,960 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
250605-22:02:29,965 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:29,965 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:30,78 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.102838s.
250605-22:02:31,963 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
250605-22:02:31,976 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250605-22:02:32,214 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.247605s.
250605-22:02:32,390 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.423806s.
250605-22:02:33,254 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 71.338279s.
250605-22:02:33,966 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/segmentation".
250605-22:02:33,969 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
250605-22:02:33,969 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250605-22:02:33,972 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:33,993 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
250605-22:02:34,3 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:34,4 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.026785s.
250605-22:02:34,5 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000481s.
250605-22:02:35,962 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
250605-22:02:35,962 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
250605-22:02:35,968 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:35,968 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:35,970 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000268s.
250605-22:02:35,972 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000304s.
250605-22:02:37,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
250605-22:02:37,988 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
250605-22:02:38,0 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:38,1 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000334s.
250605-22:02:38,5 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:38,8 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000281s.
250605-22:02:39,968 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
250605-22:02:39,969 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
250605-22:02:39,973 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:39,975 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:02:39,976 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000274s.
250605-22:02:40,281 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:41,987 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
250605-22:02:41,991 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:41,997 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:42,492 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 18.483298s.
250605-22:02:42,734 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-2_bold.html
250605-22:02:42,735 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.738775s.
250605-22:02:42,738 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
250605-22:02:42,739 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 2.765076s.
250605-22:02:44,10 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
250605-22:02:44,11 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
250605-22:02:44,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
250605-22:02:44,17 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:44,17 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250605-22:02:44,19 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:44,26 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:44,27 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:44,75 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
250605-22:02:44,75 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.047932s.
250605-22:02:44,77 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
250605-22:02:44,78 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.059465s.
250605-22:02:45,996 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
250605-22:02:45,996 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
250605-22:02:46,2 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:46,3 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:02:46,3 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:46,4 cli WARNING:
Building bold report: no exclude index was found
250605-22:02:46,43 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
250605-22:02:46,44 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.040368s.
250605-22:02:46,60 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
250605-22:02:46,61 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.056856s.
250605-22:02:47,985 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
250605-22:02:47,988 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:47,989 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.00058s.
250605-22:02:48,144 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
250605-22:02:48,148 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:48,150 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.001137s.
250605-22:02:48,294 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
250605-22:02:48,297 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:48,299 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000463s.
250605-22:02:48,430 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
250605-22:02:48,433 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:48,434 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000457s.
250605-22:02:48,565 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
250605-22:02:48,568 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:48,570 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000447s.
250605-22:02:48,709 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
250605-22:02:48,712 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:02:48,713 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000445s.
250605-22:02:48,845 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:02:48,849 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:48,849 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:02:48,852 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:02:49,915 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.896117s.
250605-22:02:51,321 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 2.470652s.
250605-22:02:51,591 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.737658s.
250605-22:02:51,980 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
250605-22:02:51,984 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-22:02:52,156 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.17127s.
250605-22:02:52,284 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
250605-22:02:52,286 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
250605-22:02:52,287 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250605-22:02:52,287 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
250605-22:02:52,291 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250605-22:02:52,298 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250605-22:02:53,491 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 19.517543s.
250605-22:02:53,994 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
250605-22:02:53,998 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250605-22:02:58,750 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 6.450436s.
250605-22:02:59,328 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 5.328851s.
250605-22:02:59,990 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
250605-22:02:59,993 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-22:03:00,206 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.21221s.
250605-22:03:00,337 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
250605-22:03:00,338 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
250605-22:03:00,340 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250605-22:03:00,341 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250605-22:03:00,587 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 8.294873s.
250605-22:03:01,994 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
250605-22:03:01,997 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250605-22:03:06,564 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 84.511071s.
250605-22:03:08,1 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
250605-22:03:08,5 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:08,227 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 15.939633s.
250605-22:03:09,406 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 7.407967s.
250605-22:03:09,999 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:10,0 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:03:10,2 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:10,9 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:11,155 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 10.812775s.
250605-22:03:11,637 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 1.6269339999999999s.
250605-22:03:11,994 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:03:11,995 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:11,996 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:11,998 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:12,449 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 2.44507s.
250605-22:03:13,589 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.589757s.
250605-22:03:14,4 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:03:14,7 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:14,10 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:03:14,12 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.014632s.
250605-22:03:14,13 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250605-22:03:14,13 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250605-22:03:14,15 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:03:14,17 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250605-22:03:14,17 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250605-22:03:14,19 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:14,21 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250605-22:03:14,21 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250605-22:03:15,426 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 1.418256s.
250605-22:03:15,996 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:03:15,998 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:15,999 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:16,1 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250605-22:03:16,1 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:03:16,3 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250605-22:03:16,3 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250605-22:03:16,4 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:03:16,5 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250605-22:03:16,6 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250605-22:03:16,7 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:16,8 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250605-22:03:16,8 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250605-22:03:16,679 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 16.337268s.
250605-22:03:17,508 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 1.506704s.
250605-22:03:17,660 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 1.657887s.
250605-22:03:18,8 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250605-22:03:18,9 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250605-22:03:18,9 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250605-22:03:18,10 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250605-22:03:18,11 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250605-22:03:18,11 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250605-22:03:18,12 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250605-22:03:18,13 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250605-22:03:18,13 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250605-22:03:26,947 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 18.940521s.
250605-22:03:28,3 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/segmentation".
250605-22:03:28,7 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250605-22:06:48,880 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 254.908529s.
250605-22:06:50,208 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/segmentation".
250605-22:06:50,214 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250605-22:07:31,398 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 243.388944s.
250605-22:07:32,241 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
250605-22:07:32,241 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
250605-22:07:32,242 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
250605-22:07:32,250 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
250605-22:07:32,250 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotSegmentation".
250605-22:07:32,251 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250605-22:07:32,253 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250605-22:07:32,254 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250605-22:07:32,255 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250605-22:07:32,291 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250605-22:07:34,268 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.976347s.
250605-22:07:34,294 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 2.039988s.
250605-22:07:36,282 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
250605-22:07:36,282 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
250605-22:07:36,291 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250605-22:07:36,293 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250605-22:07:37,733 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 5.476026s.
250605-22:07:38,314 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
250605-22:07:38,322 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:07:38,323 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.00038s.
250605-22:07:38,484 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 6.229129s.
250605-22:07:40,273 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
250605-22:07:40,277 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250605-22:07:40,471 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.192917s.
250605-22:07:40,608 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
250605-22:07:40,609 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
250605-22:07:40,611 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250605-22:07:40,612 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250605-22:07:44,385 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 12.132848s.
250605-22:07:46,281 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
250605-22:07:46,290 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250605-22:07:48,564 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 7.950433s.
250605-22:07:50,270 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
250605-22:07:50,286 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:07:50,289 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000609s.
250605-22:07:50,934 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 14.639722s.
250605-22:07:51,11 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 14.719075s.
250605-22:07:52,257 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
250605-22:07:52,265 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:07:52,267 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.00081s.
250605-22:07:52,393 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
250605-22:07:52,402 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:07:52,403 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000868s.
250605-22:07:54,260 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
250605-22:07:54,260 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
250605-22:07:54,264 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:07:54,264 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:07:54,526 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport/sub-01_T1w.html
250605-22:07:54,527 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.261811s.
250605-22:07:54,640 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport/sub-02_T1w.html
250605-22:07:54,641 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.375688s.
250605-22:07:56,268 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
250605-22:07:56,271 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:07:56,273 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000473s.
250605-22:07:56,397 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
250605-22:07:56,400 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:07:56,401 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000395s.
250605-22:07:56,825 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 16.212676s.
250605-22:07:58,338 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 12.042209s.
250605-22:10:57,668 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 247.452597s.
250605-22:10:58,451 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
250605-22:10:58,451 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
250605-22:10:58,461 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250605-22:10:58,461 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250605-22:11:00,320 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.858075s.
250605-22:11:00,450 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
250605-22:11:00,461 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250605-22:11:05,580 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 7.117293s.
250605-22:11:06,464 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
250605-22:11:06,471 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250605-22:11:06,472 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000251s.
250605-22:11:11,794 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 11.332246s.
250605-22:11:12,456 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
250605-22:11:12,464 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250605-22:11:12,466 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000812s.
250605-22:11:14,466 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
250605-22:11:14,470 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250605-22:11:14,746 cli INFO:
Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport/sub-03_T1w.html
250605-22:11:14,747 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.276014s.
250605-22:11:16,464 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
250605-22:11:16,468 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250605-22:11:16,470 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000567s.
250605-22:11:18,458 cli IMPORTANT:
Participant level finished successfully.
250605-22:11:18,458 cli INFO:
Generating BIDS derivatives metadata.
250605-22:11:18,459 cli INFO:
MRIQC completed.
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
Group-level Analysis#
%%bash
mriqc ds000102 \
MRIQC \
group \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
MRIQC Visual Reports#
MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.
Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.
Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.
These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.
Anatomical Report#
%%capture
! pip install beautifulsoup4
from bs4 import BeautifulSoup
from IPython.display import HTML, display
with open('./MRIQC/sub-01_T1w.html') as f:
soup = BeautifulSoup(f, 'html.parser')
# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual T1w report
Summary
- BIDS filename: sub-01_T1w.
- Date and time: 2025-06-05, 22:07.
- MRIQC version: 22.0.6.
- Workflow details:
- Detected a zero-filled frame, has the original image been rotated?
Visual reports
Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Functional Report#
with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
soup = BeautifulSoup(f, 'html.parser')
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual bold report
Summary
- BIDS filename: sub-02_task-flanker_run-1_bold.
- Date and time: 2025-06-05, 22:02.
- MRIQC version: 22.0.6.
- Workflow details:
- Framewise Displacement was computed using
3dvolreg(AFNI) - Framewise Displacement threshold was defined at 0.200000 mm
- Framewise Displacement was computed using
Visual reports
BOLD average
Standard deviation map
FMRI summary plot
Zoomed-in BOLD average
Background noise
Calculated brain mask
Approximate spatial normalization
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Group functional report#
with open('./MRIQC/group_bold.html', 'r') as f:
html = f.read()
display(HTML(html))
MRIQC: group bold report
Summary
- Date and time: 2025-06-05, 22:12.
- MRIQC version: 22.0.6.