Skip to main content
Back to top
Ctrl
+
K
Neurodesk environment
Workflows
RISE Slideshow of a Jupyter Notebook
BIDS conversion
Nipype on Neurodesk
Basic Nipype
pyBIDS - a Python API for working with BIDS datasets
Structural Imaging
Brain extraction with different software packages
Freesurfer
QSMxT
SCT Toolbox
Diffusion Imaging
Diffusion Analysis with MRtrix: Part 2 - Constrained Spherical Deconvolution and Tissue estimation
Diffusion Analysis with MRtrix: Part 3 - Registration and Streamline Fitting
Diffusion Analysis with MRtrix: Part 1 - Preprocessing
MRtrix3Tissue
Functional Imaging
AFNI Preprocessing and GLM
Preprocessing with AFNI
ASLprep
DeepRetinotopy
First and Second Level fMRI Analysis with SPM
fMRIprep
Introduction to Preprocessing
FSL’s fMRI Data Analysis via Nipype
Repository
Open issue
Index
