How to cite us
Citing Neurodesk
Please cite the Neurodesk Preprint and if you used Neurodesktop, add the version that was used (e.g. v2023-09-20).
Renton, A. I., Dao, T. T., Johnstone, T., Civier, O., Sullivan, R. P., White, D. J., … & Bollmann, S. (2022). Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging. bioRxiv, 2022-12. doi: 10.1101/2022.12.23.521691
Citing specific tools
To guarantee reproducibility, we recommend specifying the name, version number and builddate for any containerised applications used through Neurodesk. You can find this information here.
In addition to citing Neurodesk, please remember to cite any papers associated with the tools you use. You find this information in the README.m for each tool, or when opening the application through the menu in Neurodesktop.
Citing EEG/MEG related tools
If you used any EEG/MEG/electrophysiology tools, please also link to the AEDAPT website.
Examples
Here are some example excerts of how to cite Neurodesk:
“TGV QSM (v1.0.0_20210629, Langkammer et al, 2015) was run in Neurodesk (v20220302, Renton et al, 2022)”
“EEGlab (2020.0_20211026, Delorme & Makeig, 2004) was run in Neurodesk (v20220302, Renton et al, 2022) using part of the AEDAPT project https://www.aedapt.net/”
References
- Langkammer, C; Bredies, K; Poser, BA; Barth, M; Reishofer, G; Fan, AP; Bilgic, B; Fazekas, F; Mainero; C; Ropele, S. Fast Quantitative Susceptibility Mapping using 3D EPI and Total Generalized Variation. Neuroimage. 2015 May 1;111:622-30. doi: 10.1016/j.neuroimage.2015.02.041
- Renton, Angela I., Thanh Thuy Dao, David F. Abbott, Saskia Bollmann, Megan E. J. Campbell, Jeryn Chang, Thomas G. Close, et al. “Neurodesk: An Accessible, Flexible, and Portable Data Analysis Environment for Reproducible Neuroimaging.” bioRxiv, December 23, doi: 10.1101/2022.12.23.521691
- Delorme A & Makeig S (2004) EEGLAB: an open-source toolbox for analysis of single-trial EEG dynamics, Journal of Neuroscience Methods 134:9-21. doi: 10.1016/j.jneumeth.2003.10.009