Applications

List of Applications. If any of the applications is not available under Neurodesk –> All applications in Neurodesk’s start menu (notice that menu entries are sorted alphabetically), you might not be using the latest version of Neurodesktop. Please use the platform-specific documentation page at https://www.neurodesk.org/docs/neurodesktop/getting-started/ to remove the current Neurodesktop (“Stopping neurodesktop” section down the page) and then re-install it (“Quickstart” section at the top of the page). If you are using the Nectar Desktop Service, please let us know on the discussion forum (https://github.com/NeuroDesk/neurodesk.github.io/discussions, Github account required) and we will notify you when the application becomes available there.

afni_21.2.00_20210714 functional imaging
afni_22.1.14_20220713 functional imaging
aidamri_1.1_20210708 rodent imaging
ants_2.3.1_20211204 image registration structural imaging image segmentation
ants_2.3.4_20211212 image registration structural imaging image segmentation
ants_2.3.5_20211212 image registration structural imaging image segmentation
aslprep_0.2.7_20210323 quantitative imaging workflows
ashs_2.0.0_20210105 hippocampus
bart_0.7.00_20210302 image reconstruction
bidscoin_3.7.0_20220329 data organisation
bidstools_1.0.0_20201208 data organisation
brainstorm_3.211130_20211207 electrophysiology
cat12_r1933_20220128 image segmentation image registration structural imaging
clearswi_1.0.0_20211018 phase processing
code_220114_20220121 programming
conn_20b_20210109 functional imaging
connectomeworkbench_1.4.2_20201119 functional imaging data organisation
connectomeworkbench_1.5.0_20220919 functional imaging data organisation
convert3d_1.0.0_20210104 data organisation
delphi_0.0.1_20220413 machine learning
delphi_0.0.2_20220526 machine learning
diffusiontoolkit_0.6.4.1_20220303 diffusion imaging
dsistudio_2020.10_20210109 diffusion imaging
eeglab_2020.0_20211026 electrophysiology
fatsegnet_1.0.gpu_20201212 body
fieldtrip_20211114_20211206 electrophysiology
fieldtrip_20220617_20220627 electrophysiology
fmriprep_20.1.3_20201118 functional imaging workflows
fmriprep_20.2.3_20210917 functional imaging workflows
fmriprep_20.2.6_20211209 functional imaging workflows
fmriprep_21.0.1_20220329 functional imaging workflows
freesurfer_7.1.1_20211216 image segmentation structural imaging
freesurfer_7.2.0_20211206 image segmentation structural imaging
freesurfer_7.3.2_20220812 image segmentation structural imaging
fsl_6.0.3_20200905 functional imaging structural imaging diffusion imaging image segmentation image registration
fsl_6.0.4_20210105 functional imaging structural imaging diffusion imaging image segmentation image registration
fsl_6.0.5.1_20220917 functional imaging structural imaging diffusion imaging image segmentation image registration
gimp_2.10.18_20210104 visualization
hdbet_1.0.0_20210318 image segmentation
itksnap_3.8.0_20201208 image segmentation visualization
julia_1.4.1_20210105 programming
lashis_1.0_20210105 hippocampus
lashis_2.0_20210211 hippocampus
laynii_2.2.1_20220701 functional imaging
lcmodel_6.3_20220222 spectroscopy
matlab_2022a_20220902 programming visualization
minc_1.9.17_20210105 image segmentation image registration structural imaging
mne_0.23.4_20220121 electrophysiology
mne_1.0.0_20220325 electrophysiology
mne_1.0.3_20220607 electrophysiology
mne_1.1.1_20220912 electrophysiology
mneextended_1.1.0_20220819 electrophysiology
mricrogl_1.2.20211006_20220111 visualization
mricron_1.0.20190902_20220311 visualization
mriqc_0.16.1_20210917 data organisation functional imaging quality control workflows
mritools_3.3.0_20220224 phase processing
mrtrix3_3.0.1_20200908 diffusion imaging
mrtrix3_3.0.2_20201125 diffusion imaging
mrtrix3_3.0.3_20210917 diffusion imaging
mrtrix3tissue_5.2.8_20201111 diffusion imaging
niftyreg_1.4.0_20220317 image registration
niistat_1.0.20191216_20220111 functional imaging
nipype_1.8.3_20220825 workflows
oshyx_0.3_20220110 image segmentation
oshyx_0.4_20220620 image segmentation
palm_alpha119_20211220 functional imaging
physio_r7771_20211206 functional imaging
physio_r2021a_20220220 functional imaging
qsmxt_1.1.9_20211219 phase processing quantitative imaging structural imaging workflows
qsmxt_1.1.10_20220302 phase processing quantitative imaging structural imaging workflows
qsmxt_1.1.13_20220829 phase processing quantitative imaging structural imaging workflows
rabies_0.3.5_20220111 rodent imaging
romeo_3.2.4_20211015 phase processing
romeo_3.2.7_20220224 phase processing
romeo_3.2.8_20220224 phase processing
root_6.22.02_20201104 programming
rstudio_1.4.1106_20211014 statistics
sigviewer_0.6.4_20220315 electrophysiology
slicer_4.11.20200930_20201108 image segmentation image registration structural imaging visualization
slicer_5.0.3_20220903 image segmentation image registration structural imaging visualization
slicersalt_3.0.0_20210301 shape analysis
spinalcordtoolbox_5.4_20211208 spine
spinalcordtoolbox_5.5_20220419 spine
spinalcordtoolbox_5.6_20220503 spine
spinalcordtoolbox_5.7_20220803 spine
spm12_r7771_20211206 functional imaging image segmentation image registration structural imaging
surfice_1.0.20210730_20211218 visualization
tgvqsm_1.0.0_20210629 quantitative imaging phase processing
trackvis_0.6.1_20220303 diffusion imaging
vesselapp_0.3.1_20211216 image segmentation

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