Applications
List of Applications. If any of the applications is not available under Neurodesk –> All applications in Neurodesk’s start menu (notice that menu entries are sorted alphabetically), you might not be using the latest version of Neurodesktop. Please use the platform-specific documentation page at https://www.neurodesk.org/docs/neurodesktop/getting-started/ to remove the current Neurodesktop (“Stopping neurodesktop” section down the page) and then re-install it (“Quickstart” section at the top of the page). If you are using the Nectar Desktop Service, please let us know on the discussion forum (https://github.com/NeuroDesk/neurodesk.github.io/discussions, Github account required) and we will notify you when the application becomes available there.
- afni_21.2.00_20210714 functional imaging
- aidamri_1.1_20210708 rodent imaging
- ants_2.3.1_20211204 image registration structural imaging image segmentation
- ants_2.3.4_20211212 image registration structural imaging image segmentation
- ants_2.3.5_20211212 image registration structural imaging image segmentation
- aslprep_0.2.7_20210323 quantitative imaging
- ashs_2.0.0_20210105 hippocampus
- bart_0.7.00_20210302 image reconstruction
- bidscoin_3.7.0_20220329 data organisation
- bidstools_1.0.0_20201208 data organisation
- brainstorm_3.211130_20211207 electrophysiology
- cat12_r1933_20220128 image segmentation image registration structural imaging
- clearswi_1.0.0_20211018 phase processing
- code_220114_20220121 programming
- conn_20b_20210109 functional imaging
- connectomeworkbench_1.4.2_20201119 functional imaging data organisation
- convert3d_1.0.0_20210104 data organisation
- delphi_0.0.1_20220413 machine learning
- diffusiontoolkit_0.6.4.1_20220303 diffusion imaging
- dsistudio_2020.10_20210109 diffusion imaging
- eeglab_2020.0_20211026 electrophysiology
- fatsegnet_1.0.gpu_20201212 body
- fieldtrip_20211114_20211206 electrophysiology
- fmriprep_20.1.3_20201118 functional imaging
- fmriprep_20.2.3_20210917 functional imaging
- fmriprep_20.2.6_20211209 functional imaging
- fmriprep_21.0.1_20220329 functional imaging
- freesurfer_7.1.1_20211216 image segmentation structural imaging
- freesurfer_7.2.0_20211206 image segmentation structural imaging
- fsl_6.0.3_20200905 functional imaging structural imaging diffusion imaging image segmentation image registration
- fsl_6.0.4_20210105 functional imaging structural imaging diffusion imaging image segmentation image registration
- fsl_6.0.5.1_20220120 functional imaging structural imaging diffusion imaging image segmentation image registration
- gimp_2.10.18_20210104 visualization
- hdbet_1.0.0_20210318 image segmentation
- itksnap_3.8.0_20201208 image segmentation visualization
- julia_1.4.1_20210105 programming
- lcmodel_6.3_20220222 spectroscopy
- lashis_1.0_20210105 hippocampus
- lashis_2.0_20210211 hippocampus
- minc_1.9.17_20210105 image segmentation image registration structural imaging
- mne_0.23.4_20220121 electrophysiology
- mne_1.0.0_20220325 electrophysiology
- mricrogl_1.2.20211006_20220111 visualization
- mricron_1.0.20190902_20220311 visualization
- mriqc_0.16.1_20210917 data organisation functional imaging quality control
- mritools_3.3.0_20220224 phase processing
- mrtrix3_3.0.1_20200908 diffusion imaging
- mrtrix3_3.0.2_20201125 diffusion imaging
- mrtrix3_3.0.3_20210917 diffusion imaging
- mrtrix3tissue_5.2.8_20201111 diffusion imaging
- niftyreg_1.4.0_20220317 image registration
- niistat_1.0.20191216_20220111 functional imaging
- oshyx_0.3_20220110 image segmentation
- palm_alpha119_20211220 functional imaging
- physio_r7771_20211206 functional imaging
- physio_r2021a_20220220 functional imaging
- qsmxt_1.1.9_20211219 phase processing quantitative imaging structural imaging
- qsmxt_1.1.10_20220302 phase processing quantitative imaging structural imaging
- rabies_0.3.5_20220111 rodent imaging
- romeo_3.2.4_20211015 phase processing
- romeo_3.2.7_20220224 phase processing
- romeo_3.2.8_20220224 phase processing
- root_6.22.02_20201104 programming
- rstudio_1.4.1106_20211014 statistics
- sigviewer_0.6.4_20220315 electrophysiology
- slicer_4.11.20200930_20201108 image segmentation image registration structural imaging
- slicersalt_3.0.0_20210301 shape analysis
- spinalcordtoolbox_5.4_20211208 spine
- spinalcordtoolbox_5.5_20220419 spine
- spinalcordtoolbox_5.6_20220503 spine
- spm12_r7771_20211206 functional imaging image segmentation image registration structural imaging
- surfice_1.0.20210730_20211218 visualization
- tgvqsm_1.0.0_20210629 quantitative imaging phase processing
- trackvis_0.6.1_20220303 diffusion imaging
- vesselapp_0.3.1_20211216 image segmentation
Last modified March 30, 2022: Switch to www domain (fc17a38d)