iAward 2025 National Winner - Technology Platform

🏆 National Winner - Technology Platform

Neurodesk recognized by iAwards 2025 for advancing reproducible neuroimaging analysis

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Run Your Imaging Analyses Anywhere

Stop wrestling with dependencies, version conflicts, and platform incompatibilities.
Neurodesk gives you consistent, reproducible biomedical imaging tools across any system.

Try Neurodesk Now No installation required Install Locally
100+ Neuroimaging and Biomedical Imaging Tools Open Source Fully Transparent
Independently evaluated

“Neurodesk offers an extensive container repository, with the versatility of a command-line interface for technical users and a GUI that lowers barriers for non-technical users.”

- Imaging Neuroscience (MIT Press), accessibility and usability study Read the paper
One environment Run tools consistently across operating systems
Choose your Interface Supports graphical desktops, command line and computational notebooks
Work in the cloud Deploy anywhere without installation overhead
Contribute learning resources Share your knowledge with the community
Learn more about Neurodesk · See examples

See Neurodesk in Action

From data to analysis to visualisation—all in one reproducible environment

Neurodesk interface showing virtual desktop with neuroimaging tools

Neurodesk Components

Flexible tools that work together or independently.
Neurodesk makes it easy for beginners and experts to use biomedical imaging tools on desktop, HPC, web, and cloud.

Neurodesktop

Complete virtual desktop environment with GUI applications, ready to use in your browser or locally.

  • 100+ pre-installed neuroimaging tools
  • Familiar desktop interface for graphical applications
  • Install Neurodesk once, all tools are ready to use
Neurodesktop

Neurocontainers

Individual containerised tools you can use in your own pipelines and workflows.

  • Transparent, version-controlled builds
  • Use via Docker or Singularity
  • Perfect for HPC and cloud
neurocontainer

Neurocommand

Command-line tool manager that fetches and runs containers seamlessly.

  • Simple module-based interface
  • Integrates with existing workflows
  • Accessible through Neurodesk for command-line workflows
Neurocommand
$ pip3 install -r neurodesk/requirements.txt --user
$ bash build.sh --cli
$ bash containers.sh
$ module use $PWD/local/containers/modules

Community

Neurodesk is a community project.

Our active community provides transparency and inclusion. We encourage you to engage and contribute.

Support Us

Help sustain Neurodesk with a donation to support development and infrastructure

FAQ

Frequently Asked Questions

Discussions

Ask questions, suggest new features or raise any issues you have (Github account required)

Contributors

Contributors

Contribution Guide

Learn how you can contribute to Neurodesk code and documentation

Ready to Run Neurodesk Anywhere?

Join researchers worldwide using Neurodesk for transparent, reproducible neuroimaging.

Get Started Now Learn More