Neurodesk

Quick start

A flexible and scalable data analysis environment for reproducible neuroimaging with Neurodesk.

What is Neurodesk ? Play Nectar Google Colab Windows MacOS Linux

Get started with Neurodesk

Select your setups and follow further instructions in the provided link.

Compute Platform

Your OS

Interface

Processor

Instructions:

Compute Platform

Local PC

HPC

Cloud

Google Colab

Operating System

Linux

Mac

Windows

Interface

Desktop

Command Line

Container

VSCode

Processor

x86

ARM

GPU

Instructions:

Community

Neurodesk is a community project.

Our active community provides transparency and inclusion. We encourage you to engage and contribute.

FAQ

Frequently Asked Questions

Discussions

Ask questions, suggest new features or raise any issues you have (Github account required)

Contributors

Contribution Guide

Learn how you can contribute to Neurodesk code and documentation

Neurodesk Components

Details of each component within the Neurodesk project.
Neurodesk makes it easy for beginners and experts to use neuroimaging tools for desktop, hpc, web, and cloud.

Neurocontainers

Software container library

Neurocommand

Core installer

$ pip3 install -r neurodesk/requirements.txt --user
$ bash build.sh --cli
$ bash containers.sh
$ module use $PWD/local/containers/modules

Neurodesktop

Fully featured desktop in a container

Acknowledgments

This work benefited from services and resources provided by the EGI Federation with the dedicated support of CESNET-MCC. Thank you to Google Cloud and AWS for providing cloud credits to support this project since 2024. We thank Oracle for Research for supporting our project from 2022 to 2023.